Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq199 100 3e-16 seq150 91.5 1e-13 seq57 82.4 8e-11 >seq1 Length=2270075 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| || || ||||| ||||| | || || ||| || ||||| Sbjct 785437 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGCTGC 785496 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| |||||||||||||| ||||| || || || ||||| ||| | || Sbjct 785497 TTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTC-TTGAATCTT 785555 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | ||| ||||| | ||| | ||||||||| || Sbjct 785556 CGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCAGT 785615 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| ||||| || ||||| Sbjct 785616 CAATGTTTTGACGAAGATCTGCAT 785639 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| || || ||||| || ||| || || | ||||||||||| Sbjct 785893 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGC 785952 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| || ||||||||||| ||||| || || || ||||| ||| | || Sbjct 785953 TTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTT 786011 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | ||| || || | || | ||||||||| || Sbjct 786012 CGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGT 786071 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 786072 GAGGGTCTTAACGAAGATCTGCAT 786095 >seq199 Length=104010 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || || | || | | |||||||||||| || ||||| | Sbjct 100596 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTGCTTGCCAGCGAA 100537 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||| ||| || || || ||||| |||||||| ||||| ||| || || | | Sbjct 100536 GATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTT 100477 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | |||||||| | ||| ||||||| ||| | ||||| || |||| || || || Sbjct 100476 GTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGGGTCTTGAC 100417 Query 139753 GAATATTTGCATA 139765 ||| ||||||||| Sbjct 100416 GAAGATTTGCATA 100404 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | ||| ||| || ||||||||||| || Sbjct 100910 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 100851 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||| ||||| || ||||| ||||||| || ||||| || || || Sbjct 100850 GAGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 100791 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 100790 AATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 100731 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 100730 TTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 >seq150 Length=1432513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 |||||||||||||| | |||||| ||||||||||||| ||||| ||| | || | | Sbjct 455736 GGCATGAACGCGACACTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTTCTCGTC 455795 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||||||| | ||||| || || | | |||||||| || ||| ||| || Sbjct 455796 GCGCTCGGTGACCCGAAGGTGTACAACGTGTCGAACCCCTTCGACTTCATGGACATGATC 455855 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051 |||||| |||| || || ||||| ||||||| ||||| Sbjct 455856 TCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGTGT 455893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 52611 TTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTT 52670 |||||| || || || || || || || ||| || ||| | || || || || || Sbjct 453341 TTTTGCTGAGCGACTAGTGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCTCCGGCTCATT 453282 Query 52671 TGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACG 52729 ||| || ||||||| | || || | |||| | |||||||| || ||||| ||||| Sbjct 453281 TGCTGCCATATTTTGGCTTAAGAAGCGCGGGC-TCATGCCCGGGCTGACGTTCTCCAACG 453223 Query 52730 AGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776 || ||||| |||||||| ||||||||||| |||||||| ||| || Sbjct 453222 AGCTGATAATCCGCGACGAGGGAATGCACACCGATTTTGCATGTCTG 453176 >seq57 Length=802683 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | ||| ||| || ||||||||||| || Sbjct 363420 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 363361 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| ||||| || ||||| |||||| || ||||| || || || Sbjct 363360 GAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGG 363301 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | || | | || | ||||| | | ||| | Sbjct 363300 AATGCCTTCCTTATC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGA 363242 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 363241 CCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062598619200