Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06]
226 sequences; 43,856,698 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq199 100 3e-16
seq150 91.5 1e-13
seq57 82.4 8e-11
>seq1
Length=2270075
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| || || ||||| ||||| | || || ||| || |||||
Sbjct 785437 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGCTGC 785496
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || ||| |||| |||||||||||||| ||||| || || || ||||| ||| | ||
Sbjct 785497 TTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTC-TTGAATCTT 785555
Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| || | | || | ||||| | | ||| ||||| | ||| | ||||||||| ||
Sbjct 785556 CGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCAGT 785615
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
||| ||||| ||||| || |||||
Sbjct 785616 CAATGTTTTGACGAAGATCTGCAT 785639
Score = 82.4 bits (90), Expect = 8e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| ||| ||||| || || ||||| || ||| || || | |||||||||||
Sbjct 785893 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGC 785952
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| ||||| |||| || ||||||||||| ||||| || || || ||||| ||| | ||
Sbjct 785953 TTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTT 786011
Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| || | | || | ||||| | | ||| || || | || | ||||||||| ||
Sbjct 786012 CGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGT 786071
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| || || ||||| || |||||
Sbjct 786072 GAGGGTCTTAACGAAGATCTGCAT 786095
>seq199
Length=104010
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || |||||||| || || | || | | |||||||||||| || ||||| |
Sbjct 100596 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTGCTTGCCAGCGAA 100537
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
||||| ||| || || || ||||| |||||||| ||||| ||| || || | |
Sbjct 100536 GATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTT 100477
Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752
|| | |||||||| | ||| ||||||| ||| | ||||| || |||| || || ||
Sbjct 100476 GTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGGGTCTTGAC 100417
Query 139753 GAATATTTGCATA 139765
||| |||||||||
Sbjct 100416 GAAGATTTGCATA 100404
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||||| || | ||| | ||| ||| || ||||||||||| ||
Sbjct 100910 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 100851
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||||| ||||| || ||||| ||||||| || ||||| || || ||
Sbjct 100850 GAGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 100791
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| || || | | || | ||||| | | ||| ||
Sbjct 100790 AATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 100731
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||||||| ||||| || || ||||| || |||||
Sbjct 100730 TTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683
>seq150
Length=1432513
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953
|||||||||||||| | |||||| ||||||||||||| ||||| ||| | || | |
Sbjct 455736 GGCATGAACGCGACACTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTTCTCGTC 455795
Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013
||||||| | ||||| || || | | |||||||| || ||| ||| ||
Sbjct 455796 GCGCTCGGTGACCCGAAGGTGTACAACGTGTCGAACCCCTTCGACTTCATGGACATGATC 455855
Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051
|||||| |||| || || ||||| ||||||| |||||
Sbjct 455856 TCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGTGT 455893
Score = 87.8 bits (96), Expect = 2e-12
Identities = 121/167 (72%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 52611 TTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTT 52670
|||||| || || || || || || || ||| || ||| | || || || || ||
Sbjct 453341 TTTTGCTGAGCGACTAGTGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCTCCGGCTCATT 453282
Query 52671 TGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACG 52729
||| || ||||||| | || || | |||| | |||||||| || ||||| |||||
Sbjct 453281 TGCTGCCATATTTTGGCTTAAGAAGCGCGGGC-TCATGCCCGGGCTGACGTTCTCCAACG 453223
Query 52730 AGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776
|| ||||| |||||||| ||||||||||| |||||||| ||| ||
Sbjct 453222 AGCTGATAATCCGCGACGAGGGAATGCACACCGATTTTGCATGTCTG 453176
>seq57
Length=802683
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||||| || | ||| | ||| ||| || ||||||||||| ||
Sbjct 363420 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 363361
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | |||||| ||||| || ||||| |||||| || ||||| || || ||
Sbjct 363360 GAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGG 363301
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|||||||| || || ||| | || | || | | || | ||||| | | ||| |
Sbjct 363300 AATGCCTTCCTTATC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGA 363242
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | || | ||||||||| ||||| || || ||||| || |||||
Sbjct 363241 CCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496062598619200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |