Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq150 176 6e-39 >seq150 Length=1432513 Score = 176 bits (194), Expect = 6e-39 Identities = 375/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| ||||| |||||||| | || || | ||||| || |||||||| Sbjct 455568 CAAGCAAAATCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTGAGG 455509 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| ||||| |||||||| |||||||| |||||| Sbjct 455508 CCGGGCATGAGACCACGCTTCTTGAGCCAGAATATGGACGCAAAGGATCCAGAGAAGAAG 455449 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGT 42241 || || || ||||| || ||||| | |||| ||| || | | | | ||||| Sbjct 455448 ATACCCTCGACTGCAGCGAAGGCCACCAGTCGCTCAGCAAAGCTCGACCGCTTGTCAGCG 455389 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| || |||||||| || | || || || || || ||||||| Sbjct 455388 ATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCATCG 455329 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || | | | ||| || || | || || ||||| | || ||| | Sbjct 455328 AATAGGTGCTCGCGCTGCTTAGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAGTACGTC 455269 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || ||||||||||| | ||||| | || Sbjct 455268 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAACAGCGCGCCTCAGCCGCC 455209 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 ||||| || | | || || || | | || ||||| || || ||||| || || Sbjct 455208 TGTACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAAGCGGCG 455149 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537 || || || | ||||| || || | | |||| | ||| || || ||||| Sbjct 455148 AAGAAAGCAAGGACATGGGAGATGAAGTGTCGCTCGT-TGTCGTTCATGCGGTTGTTCCA 455090 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | || || || || | || | || || |||||||| ||||| || || ||||| Sbjct 455089 GTCGTGGAGGTCCTTGGAGAGGTCGATCTCCTCGACCGTCCAGAATGAGGCCTCGGCCTT 455030 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 455029 CTTGTACATCTGCCAGAT 455012 Score = 165 bits (182), Expect = 1e-35 Identities = 296/432 (69%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || |||||| |||||| ||||| ||||| || | | || | |||||||| ||||| Sbjct 453176 CAGACATGCAAAATCGGTGTGCATTCCCTCGTCGCGGATTATCAGCTCGTTGGAGAACGT 453235 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || |||||||| || || ||||| |||||||||||||| | |||||||| || || || Sbjct 453236 CAGCCCGGGCATGAGCCCGCGCTTCTTAAGCCAAAATATGGCAGCAAATGAGCCGGAGAA 453295 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTC 42237 |||||| || || ||||| || ||||| | |||| ||| || ||| | | |||| Sbjct 453296 GAAGATACCCTCGACTGCGGCGAAGGCCACTAGTCGCTCAGCAAAACTTGACCGCTTGTC 453355 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 |||||| |||||||||| |||||||| || | || || || || || ||||| Sbjct 453356 CGATATCCAGCGGAGAGCCCAATCCGCCTTCTTCTTGATGCACGGTATTGTCTCGATGGC 453415 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | ||| || || | || | || || | || || ||||| | || ||| Sbjct 453416 GTCAAATAGGCGGTCTCGCTCTTGCGGGTCCTTGATGTACGTGTCGATGAGCAGCGAATA 453475 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || ||||||||||| || || || || || || |||||||||| ||||| | Sbjct 453476 TGTCTCGGAATGAATGTTCTCCATCATTATTTGGAAGCCATAGAAACATCGTGCCTCCGC 453535 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | | || ||||| | | || || || | | || ||||||||||| || || ||| Sbjct 453536 AGCTTGCACTTCATTCGAGAAGCGCTCGACAAGGTTCTCGTTCACTATGCCATCGGAGGC 453595 Query 42478 TGCAAAAAACGC 42489 || || || || Sbjct 453596 GGCGAAGAATGC 453607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137304031760