Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq150 96.9 4e-15 seq1 93.3 4e-14 >seq150 Length=1432513 Score = 96.9 bits (106), Expect = 4e-15 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 50406 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50465 ||| || || || ||||||| || ||| ||| || ||| | || || ||||| || Sbjct 453341 TTTTGCTGAGCGACTAGTGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCTCCGGCTCATT 453282 Query 50466 TGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACG 50524 ||| |||||||||| |||| || | ||| | |||||||| || ||||| ||||| Sbjct 453281 TGCTGCCATATTTTGGCTTAAGAAGCGCGGGC-TCATGCCCGGGCTGACGTTCTCCAACG 453223 Query 50525 AGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGC 50584 || |||| |||||||| ||||||||||| || ||||| ||| || || | || || Sbjct 453222 AGCTGATAATCCGCGACGAGGGAATGCACACCGATTTTGCATGTCTG--CT-CTATCAGC 453166 Query 50585 GCGTAAATGAAAAATTATCATACGAA-ACAATTTTGGACATGTTCAAAGAAGCCGTCGAC 50643 | | || | |||| ||| |||| ||| || ||| ||| |||||||||| Sbjct 453165 ACCTGAAACGGAGATTA-CATCCGAACGTCATTCTGAGCATCGTCACGGAAGCCGTCGCA 453107 Query 50644 ATCGAAAAAGAGTTTTTCACGG 50665 || || |||||||| | |||| Sbjct 453106 ATTGAGCAAGAGTTTCTGACGG 453085 >seq1 Length=2270075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||| || || || ||||||||||| | || || ||| || || || Sbjct 785436 ATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGCTG 785495 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || ||| |||| |||||||||||||| ||||| || || || ||||| ||| || Sbjct 785496 CTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAATCTT 785555 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||||| | | || || || | || | ||||||||| || Sbjct 785556 CGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCAGT 785615 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 ||||||||| ||||| || ||||| Sbjct 785616 CAATGTTTTGACGAAGATCTGCAT 785639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012967684320