Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq57 125 2e-23 seq1 125 2e-23 seq199 123 6e-23 >seq57 Length=802683 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| |||||||| || ||||| | ||||||||| || || || ||||| || Sbjct 363383 TCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAG 363324 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| || ||||| || || ||||| |||||||||||||| || || ||||| Sbjct 363323 ATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTG 363264 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | || ||||| || || || ||||| || || | || || || Sbjct 363263 TCGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACG 363204 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 363203 AAAATCTGCATT 363192 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || |||| ||||||||||| || || ||||| || Sbjct 363105 TCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTGCTTACCAGCGAAG 363046 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | |||||| || ||||| || ||||| || ||||| ||||| || || || || Sbjct 363045 ATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTTG 362986 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| || || ||||| || ||||||||||| || || || || || || Sbjct 362985 TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGAGTCTTGACG 362926 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 362925 AAGATTTGCAT 362915 >seq1 Length=2270075 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | |||||||| | || || || Sbjct 786180 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAACTGCTTGCCT 786239 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| ||||| || || || |||||||||||||| || || Sbjct 786240 GCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTTA 786299 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| || || |||||||| || || || || Sbjct 786300 ACATTGTCGATTGTGTC-AGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCCGTGAGAGT 786358 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 786359 CTTGACAAAGATCTGCAT 786376 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| || || || || ||||| ||||| || || || || || | |||||| Sbjct 785655 AAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCGTC 785714 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 785715 CTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 785774 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| || ||||| || | || || | || ||||| | ||||| || Sbjct 785775 TTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAACGTAATGGT 785834 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| |||||||| Sbjct 785835 CTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || ||||| | || || || ||||| || || ||||| || | || | Sbjct 785878 AGCCGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGG 785937 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || ||||| || || || | || ||||| ||||| || || || Sbjct 785938 CCATCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCC 785997 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| || || || || || | || || || || || || || || Sbjct 785998 TTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTG 786057 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || || ||||||||| Sbjct 786058 ATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATT 786096 >seq199 Length=104010 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || |||||||| || |||| |||||||| || || || ||||| || Sbjct 100595 TCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTGCTTGCCAGCGAAG 100536 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | |||||| || ||||| || ||||| || ||||| ||||| || || || || Sbjct 100535 ATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTTG 100476 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| || || ||||| || ||||||||||| || || || || || || Sbjct 100475 TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGGGTCTTGACG 100416 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 100415 AAGATTTGCAT 100405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395065982008