Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 1e-13 seq199 87.8 2e-12 >seq57 Length=802683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 |||||||||||||| || || ||||||||||| | | || ||||||| |||||| Sbjct 362559 TGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGC 362500 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||||||| || | || ||||||||| || || Sbjct 362499 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTT 362440 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||||| |||| || ||||| || || || Sbjct 362439 GCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTA 362380 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 362379 AGGGTCTTGACGAAGATCTGCAT 362357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| || |||||||| || | | |||| |||| || ||||| Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || |||||||| || ||| || | | |||||||||| || || Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 362999 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || || || |||| |||||| ||| | || || || || || Sbjct 362998 CGCCTTAACGTTGTCG--ATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCT 362941 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || ||||| Sbjct 362940 GTCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 48490 ACAGTCAAAA-CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGT 48548 ||| ||| || || ||||| | | | ||| | || || || |||||||| ||||||| Sbjct 363430 ACACTCAGAAGCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGT 363371 Query 48549 TGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCT 48608 | || || | | || |||| ||||||||||| || || | || || ||||||| Sbjct 363370 TATAGTCCGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCT 363311 Query 48609 GATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGG 48668 | || ||| | | |||||| ||| ||| ||| ||||| | | ||||| || | Sbjct 363310 GGTCAGGCGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAG 363251 Query 48669 TAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| || || || || || || | ||| ||||| ||||||||||| Sbjct 363250 ACGACTCGACCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 >seq199 Length=104010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 |||||||||||||| || || ||||||||||| | | || ||||||| |||||| Sbjct 100051 TGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGC 99992 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||||||| || | || ||||||||| || || Sbjct 99991 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTG 99932 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||||| |||| || ||||| || || || Sbjct 99931 GCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTA 99872 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 99871 AGGGTCTTGACGAAGATCTGCAT 99849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| ||||||||||| |||| | |||| |||| || ||||| Sbjct 100608 ATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTG 100549 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || |||||||| || ||| || | | |||||||||| || || Sbjct 100548 CTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 100489 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || || || |||| |||||| ||| | || || || || || Sbjct 100488 CGCCTTAACGTTGTCG--ATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCT 100431 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || || ||||| Sbjct 100430 GTCAGGGTCTTGACGAAGATTTGCAT 100405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250039716226