Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq57 95.1 1e-14 seq199 89.7 5e-13 >seq1 Length=2270075 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||| ||||| || | ||| ||||| | || | ||||| Sbjct 785430 ACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTC 785489 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || ||||||| | | ||||||||| ||||| ||||| || ||||| | Sbjct 785490 CAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTG 785549 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| ||| | ||| ||||||| ||||| || | ||||| || || Sbjct 785550 AATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTT 785609 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | ||||| || ||||||||||||| Sbjct 785610 GCCAGTCAATGTTTTGACGAAGATCTGCATGC 785641 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| ||||| || || ||||| || | || ||||| | || || || ||| Sbjct 785658 CACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCG--AGAGGGTACGACCGTCC 785715 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || || | ||||| | | ||||| || ||||| || || || ||||| Sbjct 785716 TCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 785775 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| ||||||||||| | ||| ||||| | ||||| || | ||| ||||| Sbjct 785776 TGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAACGTAATGGTC 785835 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| ||||||||||||||||||| Sbjct 785836 TTCCCGGTGAGAGTCTTCACAAAGATCTGCATGC 785869 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || || | ||| || ||||| || || Sbjct 785899 GTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGCTTCCCA 785958 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||||||| ||||||||||| || ||||| | ||| || ||||| Sbjct 785959 GCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTC 786018 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||||| ||||| || | |||||| || || || || || || Sbjct 786019 ACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGGGTC 786078 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 786079 TTAACGAAGATCTGCAT 786095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| ||||| || | ||| |||||| || | || || |||||| ||||| || | Sbjct 786408 GTAGACTCCTTCTGGATGTTGTAATCGGACA--GCGTACGACCATCCTCGAGCTGCTTGC 786465 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| || | |||||||| || |||||||| || ||||| | || || |||| Sbjct 786466 CCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTCGCCT 786525 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | ||||| | ||||| || | |||||| || || || || || | Sbjct 786526 TCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTCTTGCCCGTGAGTG 786585 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || |||||||||||||| Sbjct 786586 TCTTGACAAAGATCTGCAT 786604 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || |||| || | | |||||||| ||||| || || || || Sbjct 786222 TCTTCCAACTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTA 786281 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| || | ||| ||||||| | ||||| || | ||||| Sbjct 786282 TCCTGAATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATA 786341 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || |||||||||||||| Sbjct 786342 GTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 786376 >seq57 Length=802683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| || |||||||| || ||| Sbjct 362511 TCCTCTAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTG 362452 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||| || | ||| ||||| | || || || | ||||||| Sbjct 362451 TCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATG 362392 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| || || || ||||||||||||| Sbjct 362391 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATGC 362355 >seq199 Length=104010 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| || |||||||| || ||| Sbjct 100003 TCCTCTAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTG 99944 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | ||| ||||| | || || || | ||||||| Sbjct 99943 TCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATG 99884 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| || || || ||||||||||||| Sbjct 99883 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATGC 99847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289933577360