Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 113 7e-21 seq2 96.9 5e-16 seq212 87.8 3e-13 >seq1 Length=2270075 Score = 113 bits (124), Expect = 7e-21 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| || ||||||||||| || |||||| |||| || | ||||||| Sbjct 1353627 GCTATTCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTCGGGTCTCATCTATGAG 1353686 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| ||||| ||| ||||||||||||||| ||| ||| |||| || || || || Sbjct 1353687 GAGACTCGTGGTGTCTTGAAGATCTTCCTCGAGAACGTGATCCGGGACTCTGTCACGTAC 1353746 Query 16607 ACCGAGCACGCTAAACG 16623 || ||||| || ||||| Sbjct 1353747 ACAGAGCATGCCAAACG 1353763 >seq2 Length=867624 Score = 96.9 bits (106), Expect = 5e-16 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| ||||||||||| || ||||||||| ||||||| || |||| || Sbjct 790473 GCTATCCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTGATCTACGAG 790414 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||| | |||||||||||| ||| ||| Sbjct 790413 GAGACCCGTGGTGTGCTCAAGATCTTCCTCGAGAACGT 790376 >seq212 Length=74140 Score = 87.8 bits (96), Expect = 3e-13 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16468 CCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGT 16527 || ||| |||||||| || || ||||||||||| || || || ||||| ||||||||| | Sbjct 73197 CCTAGGTATCACCAAACCTGCCATCCGTCGTCTCGCACGGCGAGGTGGTGTCAAGCGTAT 73256 Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||| || | |||| ||||||| || | || | |||||||||||| ||| Sbjct 73257 CTCGGGCCTTATCTACGAAGAGACCCGAGGCGTCCTCAAGATCTTCCTCGAGA 73309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074993366618