Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq199 109 5e-19 seq57 102 7e-17 seq1 91.5 1e-13 >seq199 Length=104010 Score = 109 bits (120), Expect = 5e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | ||||| ||||||| |||||||| Sbjct 100682 AATGCAGATTTTCGTGAAGACTTTGACGGGCAAGACGATCACTCTCGAAGTCGAGTCGTC 100741 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 100742 TGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATTCCGCCTGACCA 100801 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||| | || || || ||||| || | ||||||| ||| || Sbjct 100802 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTAC 100846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| ||||||||||||| || Sbjct 99849 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTCATCG 99908 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || |||||||| || || Sbjct 99909 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGATCAG 99968 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || ||||| || |||| || | || || | ||||||||| Sbjct 99969 CAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTACAAC 100028 Query 25179 ATTCAAAAAGA 25189 || || ||||| Sbjct 100029 ATCCAGAAAGA 100039 >seq57 Length=802683 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| ||||||||||||| || Sbjct 362357 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTCTTCG 362416 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||| ||| ||||| || || |||||||| || || Sbjct 362417 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGATCAG 362476 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || ||||| || |||| || | || || | ||||||||| Sbjct 362477 CAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTACAAC 362536 Query 25179 ATTCAAAAAGA 25189 || || ||||| Sbjct 362537 ATCCAGAAAGA 362547 Score = 100 bits (110), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | ||||| |||| || |||||||| Sbjct 363192 AATGCAGATTTTCGTGAAGACTTTGACGGGCAAGACGATCACTCTCGAGGTCGAGTCGTC 363251 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| ||||| || || | || || | ||| || || ||||| ||||| ||||| Sbjct 363252 TGACACCATCGA--CAATGTCAAGGCGAAGATTCA-GGATAAGGAAGGCATTCCGCCTGA 363308 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || ||||| || | ||||| | ||| ||| | || || Sbjct 363309 CCAGCAGCGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACTCTCTCGGACTA 363368 Query 25175 CAATATTCAAAAAGA 25189 || ||||| || || Sbjct 363369 TAACATTCAGAAGGA 363383 >seq1 Length=2270075 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || |||| || | || || ||||| || Sbjct 785867 ATGCAGATCTTTGTGAAGACTCTCACCGGGAAGACCATTACGTTGGAGGTCGAGTCATCG 785808 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | ||||| | ||| ||||| || || || || |||||| Sbjct 785807 GACACGATCGA--CAATGTCAAGGCAAAGATTCAA-GACAAGGAGGGCATCCCTCCTGAC 785751 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | || || | ||| || | |||||| Sbjct 785750 CAGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGTCGTACCCTCTCGGATTAC 785691 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || ||| | ||| | ||||| Sbjct 785690 AATATCCAGAAGGAGTCGACGTTGCATCTGGTGCT 785656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326806452190