Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq57 127 2e-24 seq199 123 3e-23 >seq1 Length=2270075 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| |||||| || |||||| || ||||||||||| | Sbjct 785641 CCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAG 785700 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 785701 AGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 785760 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| | ||| | |||| |||| | | | |||||| || || || Sbjct 785761 ATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGAC 785819 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||| ||||| || || || || ||||| |||||||| ||||| Sbjct 785820 CTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 >seq57 Length=802683 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 ||||||||| || || || |||||||| | || ||||| |||| ||||||||||| || Sbjct 362554 TGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCC 362495 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 |||||| || || |||||||| || | ||| | | |||||||||| ||| ||| || Sbjct 362494 AGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTT 362435 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | | | | ||||| || ||||| |||| ||||||||| ||||| || || || Sbjct 362434 CACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGT 362375 Query 42191 CTTTACAAAGATTTGCAT 42208 ||| || ||||| ||||| Sbjct 362374 CTTGACGAAGATCTGCAT 362357 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||||||||||| || || ||||| || | || || ||| |||| |||||||| Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 |||||||||||| || | ||||| ||||| | || | || ||||||||| || | | Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-TGGATCT 363000 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | | | ||| | | | |||||| || || || || | || || || || || | Sbjct 362999 TCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTG 362940 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || ||||||||||| Sbjct 362939 TCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| | || | || |||||||| ||||| || || || | ||||| || | Sbjct 363408 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACC 363349 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || | ||||||||||| | || | || ||||| Sbjct 363348 GTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 363289 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | |||| | | | ||||| ||| || || |||| |||| Sbjct 363288 ATCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGA 363230 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || |||||||| | ||||| || || || |||||| Sbjct 363229 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 42009 AATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA 42068 || ||||||||||| || || || || || | || || || |||| || || ||||| Sbjct 362833 AAGGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTG 362774 Query 42069 CCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG- 42127 ||||| || || || || |||||||| | || | | |||||||| | ||| | || | Sbjct 362773 CCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTCGC 362715 Query 42128 TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 |||| ||| | | | || || ||||| || || | || ||||| |||||||| | Sbjct 362714 CTTGA-CGTTGTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCCGTGA 362656 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || ||||| Sbjct 362655 GCGTCTTGACGAAAATCTGCAT 362634 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| |||| ||||| ||| | || || |||||||| || Sbjct 362269 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 362210 Query 42072 GCGAATATGAGTCGCTGCTGGTCGG 42096 ||||| ||||| || |||||||||| Sbjct 362209 GCGAAGATGAGGCGTTGCTGGTCGG 362185 >seq199 Length=104010 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 ||||||||| || || || |||||||| | || ||||| |||| ||||||||||| || Sbjct 100046 TGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCC 99987 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 |||||| || || |||||||| || | ||| | | |||||||||| ||| || || Sbjct 99986 AGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 99927 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | | | | ||||| || ||||| |||| ||||||||| ||||| || || || Sbjct 99926 CACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGT 99867 Query 42191 CTTTACAAAGATTTGCAT 42208 ||| || ||||| ||||| Sbjct 99866 CTTGACGAAGATCTGCAT 99849 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 42000 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||||||||||| ||||| ||||| |||| || || ||| |||| || Sbjct 100614 ACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTC 100555 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || | ||||| ||||| | || | || ||||||||| | Sbjct 100554 GAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-T 100496 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 | | || | | | ||| | | | |||||| || || || || | || || || | Sbjct 100495 GGATCTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||| || ||||||||||| Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| | || | || |||||||| ||||| || || || | || || || | Sbjct 100898 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACC 100839 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 100838 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 100779 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| || |||| ||| | | | ||||| ||| || || |||| |||| Sbjct 100778 GTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGA 100720 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || |||||||| | ||||| || || || |||||| Sbjct 100719 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || || || || | || || || |||| || || ||||| ||| Sbjct 100322 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 100263 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 || || || || || |||||||| | || | | |||||||| | ||| | || | || Sbjct 100262 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTCGCCTT 100204 Query 42131 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 || ||| | | | || || ||||| || || | || ||||| |||||||| |||| Sbjct 100203 GA-CGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTTGCCCGTGAGCG 100145 Query 42190 TCTTTACAAAGATTTGCAT 42208 |||| || || || ||||| Sbjct 100144 TCTTGACGAAAATCTGCAT 100126 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| |||| ||||| ||| | || || |||||||| || Sbjct 99761 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 99702 Query 42072 GCGAATATGAGTCGCTGCTGGTCGG 42096 ||||| ||||| || |||||||||| Sbjct 99701 GCGAAGATGAGGCGTTGCTGGTCGG 99677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211265423840