Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq199 107 2e-18 seq57 104 2e-17 seq145 95.1 1e-14 >seq1 Length=2270075 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| ||||| | |||||| || || || || |||||||| | | Sbjct 785641 CCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAG 785700 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| ||||||||||| || || | ||||| ||||||||||| ||||| Sbjct 785701 AGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 785760 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || ||| ||| ||| || | || || | || || Sbjct 785761 ATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACC 785820 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | ||| || || || || ||||| Sbjct 785821 TCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || || || || ||||||||||| | | || | |||| || ||| Sbjct 785434 AGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGC 785493 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | ||||| || ||||| || ||||| || || || || ||||| || Sbjct 785494 TGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAATC 785553 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || ||| | || || || | || | |||||||| Sbjct 785554 TTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCA 785613 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| || ||||| Sbjct 785614 GTCAATGTTTTGACGAAGATCTGCAT 785639 >seq199 Length=104010 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||| || || | || || || | ||||| ||||||||||| || | Sbjct 100873 TCCTTCTGAATGTTATAGTCCGAGAGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAG 100814 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || ||||| ||||| || ||||| || || ||| || Sbjct 100813 ATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG 100754 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || ||||| | ||| | |||||||| |||||||| || ||| Sbjct 100753 TCGATGGTGTCAGACGACTCGACTTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACG 100694 Query 64433 AAAATTTGCATT 64444 ||||| |||||| Sbjct 100693 AAAATCTGCATT 100682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || ||||||||||| | || || || |||| || ||||||||||| || | Sbjct 100039 TCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCCAGCGAAG 99980 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||| || || ||||| || || || || || || || ||| ||| Sbjct 99979 ATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 99920 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | |||||||| | || | ||||||||| || | || || ||| Sbjct 99919 TCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGTCTTGACG 99860 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 99859 AAGATCTGCAT 99849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || || ||| ||||||| ||||||||||| || | Sbjct 100595 TCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTGCTTGCCAGCGAAG 100536 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| ||||| ||||| || ||||| || || || || || ||| || Sbjct 100535 ATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTTG 100476 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | || || || | || | ||||| || |||| || || ||| Sbjct 100475 TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGGGTCTTGACG 100416 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 100415 AAGATTTGCAT 100405 >seq57 Length=802683 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||| || || | || || || ||||||| ||||||||||| || | Sbjct 363383 TCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAG 363324 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| || ||||| ||||| || || || || || ||| ||| Sbjct 363323 ATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTG 363264 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | ||| | |||||||| |||||||| || ||| Sbjct 363263 TCGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACG 363204 Query 64433 AAAATTTGCATT 64444 ||||| |||||| Sbjct 363203 AAAATCTGCATT 363192 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || ||||||||||| | || || || |||| || ||||||||||| || | Sbjct 362547 TCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCCAGCGAAG 362488 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||| || || ||||| || || || || || || ||| ||| ||| Sbjct 362487 ATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTG 362428 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | |||||||| | || | ||||||||| || | || || ||| Sbjct 362427 TCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGTCTTGACG 362368 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 362367 AAGATCTGCAT 362357 >seq145 Length=652196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| || || || ||||||||||| |||| |||||| |||| Sbjct 199045 AGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCC 198986 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 |||||||||||||| || | ||||| ||||||||||| || || || Sbjct 198985 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGGGGGAT 198939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643388503440