Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq150 138 1e-27 seq57 96.9 3e-15 seq199 93.3 4e-14 seq1 82.4 8e-11 >seq150 Length=1432513 Score = 138 bits (152), Expect = 1e-27 Identities = 326/502 (65%), Gaps = 59/502 (12%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| | |||||||||||| ||||||||| | || || |||||| ||||| Sbjct 453337 GCTGAGCGACTAGTGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCTCCGGCTCATTTGCT 453278 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||| |||| |||| | | || | |||||||| ||||||||| ||||||| || Sbjct 453277 GCCATATTTTGGCTTAAGAAGCGCGGGCTCATGCCCGGGCTGACGTTCTCCAACGAGCTG 453218 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 ||| |||||||| ||| ||||||| || ||||| || || ||| || | | || Sbjct 453217 ATAATCCGCGACGAGGGAATGCACACCGATTTTGCATGTCTGCTCTATCAG---CACCTG 453161 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 | | ||| || || || || |||||||| ||| ||| || || || || || Sbjct 453160 AAACGGAGATTACATCCGAACGTCATTCTGAGCATCGTCACGGAAGCCGTCGCAATTGAG 453101 Query 52632 AAGGAGTTTTTTACGGC------------------CGCGCTGC-CGGT----------CG 52662 | |||||| | |||| |||| ||| | || || Sbjct 453100 CAAGAGTTTCTGACGGGTGCGTAAAGCCATAGCCTCGCGTTGCTCTGTGCCAGGCTCACG 453041 Query 52663 AGC-TGCTG--------------------------GGCATGAACGCGCAGTCCATGTGCG 52695 ||| ||||| ||||||||||| ||| |||||| Sbjct 453040 AGCCTGCTGCAGATGCCTTTCCCTGTGCGCTCATCGGCATGAACGCACAGCTGATGTGCC 452981 Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCA 52755 |||| ||||||||||| || || | |||||||| ||| ||| | |||| | | | Sbjct 452980 AGTATATCGAGTTTGTCGCCGACAGACTGTTGGTATCGCTAGGGAACGCAAAACATTACC 452921 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 | || ||||||||||| || ||| ||| ||||||||| |||| ||||||||||| | Sbjct 452920 ATGCAACAAATCCGTTTGATTTCATGGACATGATTTCGCTTCAGGGGAAGACCAACTTCT 452861 Query 52816 TCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||| ||| || Sbjct 452860 TCGAGAAGCGCGTCTCCGACTA 452839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 52671 GGCATGAACGCG-CAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT 52729 |||||||||||| || | ||||||| ||||||||||||| || || || || || | || Sbjct 455736 GGCATGAACGCGACACT-CATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTTCTCGT 455794 Query 52730 GCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACA 52788 |||||| | || ||| | ||||| ||| || || || || || ||| ||| | Sbjct 455795 CGCGCTCGGTGACCCGAAGGTGTACAACGTGTCG-AACCCCTTCGACTTCATGGACATGA 455853 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||| |||| ||||||||||| ||||||||||| ||| ||| || Sbjct 455854 TCTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGTGTCTCCGACTA 455902 >seq57 Length=802683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || ||| ||| || || || ||||| | | Sbjct 363106 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTGCTTACCAGCGAA 363047 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | |||||||||||||||||| || ||||| ||||| || | || | |||| | Sbjct 363046 GATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTC-CTGGATCTTCGCCTTAACGT 362988 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| ||||| ||||| | || | || || || |||||||| || Sbjct 362987 TG-TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGAGTCTTG 362929 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 362928 ACGAAGATTTGCAT 362915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||| ||||| | |||||| ||| || || || || || | | Sbjct 363384 CTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAA 363325 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||||| ||||| || || || ||||| || || ||| | || | || | | Sbjct 363324 GATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCC-TGAATCTTCGCCTTGACAT 363266 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | |||||| | |||||| ||||||| || | ||| || || |||| ||| || Sbjct 363265 TGT-CGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTC 363207 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 363206 ACGAAAATCTGCAT 363193 >seq199 Length=104010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | || ||| ||| ||||| || || || | | Sbjct 100596 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGCTGCTTGCCAGCGAA 100537 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | |||||||||||||||||| || ||||| ||||| || | || | |||| | Sbjct 100536 GATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTC-CTGGATCTTCGCCTTAACGT 100478 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| ||||| ||||| | || | || || || ||||| || || Sbjct 100477 TG-TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGGGTCTTG 100419 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 100418 ACGAAGATTTGCAT 100405 >seq1 Length=2270075 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || ||||| || || || | Sbjct 785902 GACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGCTTCCCAGCG 785961 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || |||||||| ||||| || ||||| ||| | || | || | Sbjct 785962 AAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTTCGCCTTCAC 786020 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||||| || |||| ||| | ||| || || || || || | Sbjct 786021 GTTG-TCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGGGTCT 786079 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 786080 TAACGAAGATCTGCAT 786095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260998058720