Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq199 129 6e-25 seq1 125 7e-24 seq57 114 1e-20 seq150 98.7 9e-16 seq143 95.1 1e-14 >seq199 Length=104010 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||| || ||||| || || || Sbjct 100909 CCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAG 100850 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || ||||| || |||||| |||||| |||||||| || || || Sbjct 100849 AGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGA 100790 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| ||| ||||| ||||| ||| |||||| | |||||| Sbjct 100789 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGT-CGATGGTGTCAGACGACTCGAC 100731 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||| ||||| |||| ||| || || ||||||||||| Sbjct 100730 TTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 |||||| || || ||||||||| | ||| || || |||||||| || |||||| | Sbjct 100040 CTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCCAGCGAA 99981 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||||||||| || || || |||||||||||| ||| || ||| | | Sbjct 99980 GATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 99921 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||||| ||| ||||||| || | || ||||| || || || || || Sbjct 99920 GTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGTCTTGAC 99861 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 99860 GAAGATCTGCATG 99848 >seq1 Length=2270075 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | ||| ||||| || || || ||||| ||| | Sbjct 785869 CCACCGCGCAGCCGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 785928 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || |||||| |||| | || |||||||| ||||| Sbjct 785929 AACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGA 785988 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||| | |||| |||| ||||| | | |||||| Sbjct 785989 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG-TCGATCGTGTCAGAAGACTCGAC 786047 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||| ||||| || || || || || || |||||||| Sbjct 786048 TTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 786095 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| |||||||| || || || ||||||||| || ||| ||| ||| || ||||| Sbjct 786402 TGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCCTCGAGCTGC 786461 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || || ||||||| |||||||||||||| || || |||||||||||| ||| ||| Sbjct 786462 TTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 786521 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | || | ||||| | |||||| |||| || | || ||||| || Sbjct 786522 GCCTTCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTCTTGCCCGTG 786581 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| |||||||| Sbjct 786582 AGTGTCTTGACAAAGATCTGCAT 786604 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| ||| | ||| ||||| || || ||||||||||| Sbjct 785641 CCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAG 785700 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || |||||| |||| | |||||||| || ||||| Sbjct 785701 AGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 785760 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||| | ||| | | || ||||| | |||| ||||||| |||||| Sbjct 785761 ATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGAC 785819 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || ||||| ||||| || ||||| ||||||||| Sbjct 785820 CTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCATG 785868 Score = 111 bits (122), Expect = 1e-19 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 126905 ACCAA-ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | |||||||| || || || |||||||| | ||| | | || || Sbjct 785430 ACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTC 785489 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || |||| | || |||||||| ||||| || ||||||||||| Sbjct 785490 CAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTG 785549 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || ||| ||| | |||| |||| |||||| | | |||||| |||| ||| | ||| | Sbjct 785550 AATCTTCGCCTTCACGTTG-TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCT 785608 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| |||| ||||| || || ||||||||| || Sbjct 785609 TGCCAGTCAATGTTTTGACGAAGATCTGCATGCCT 785643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || || ||| || || || | ||| || || Sbjct 786179 CGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAACTGCTTGCC 786238 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || | |||| ||||||||||| ||||| ||||||||||| ||| || || ||| Sbjct 786239 TGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTT 786298 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||||| | |||||||| || | || | || || || || ||||| Sbjct 786299 AACATTGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCCGTGAGAGT 786358 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 786359 CTTGACAAAGATCTGCAT 786376 >seq57 Length=802683 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 |||||| || || ||||||||| | ||| || || |||||||| || |||||| | Sbjct 362548 CTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCCAGCGAA 362489 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||||||||| || || || |||||||||||| ||| || ||| | | Sbjct 362488 GATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATT 362429 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||||| | ||| ||||||| || | || ||||| || || || || || Sbjct 362428 GTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGTCTTGAC 362369 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 362368 GAAGATCTGCATG 362356 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||| || ||||| || || || Sbjct 363419 CCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAG 363360 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || |||||| ||||||| |||||||| || || || Sbjct 363359 AGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 363300 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| || ||| ||||| | |||| |||||| | |||||| Sbjct 363299 ATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACC 363240 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| |||| ||| || || ||||||||||| Sbjct 363239 TCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 >seq150 Length=1432513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| || ||||| | |||| ||||| |||||||||||| | ||| | || Sbjct 453005 GGCATGAACGCACAGCTGATGTGCCAGTATATCGAGTTTGTCGCCGACAGACTGTTGGTA 452946 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 |||| | | | || |||||| | ||||| || || || ||| ||| ||| Sbjct 452945 TCGCTAGGGAACGCAAAACATTACCATGCAACAAATCCGTTTGATTTCATGGACATGATT 452886 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||| ||||||||||| ||||||||||||||| ||| || Sbjct 452885 TCGCTTCAGGGGAAGACCAACTTCTTCGAGAAGCGCGTCTCCGACTA 452839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||||||| | ||| | |||||||||| || || ||||||||||| ||||| Sbjct 455736 GGCATGAACGCGACACTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTTCTCGTC 455795 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | || ||| | ||| || ||| || ||||| || ||| ||| || Sbjct 455796 GCGCTCGGTGACCCGAAGGTGTACAACGTGTCGAACCCCTTCGACTTCATGGACATGATC 455855 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||| |||| ||||||||||| ||||||||||| ||| ||| || Sbjct 455856 TCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGTGTCTCCGACTA 455902 >seq143 Length=661151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 188/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||||||||||||||| | || || || || || |||||||| ||||||||||| || Sbjct 574568 GTCGACGGTGAACTGGATAGCCTGTGCAGCGGGGCGGGTGCGCAGGTAGTACATGCCTGT 574509 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTTC 145838 |||||| |||| |||| ||| ||||| ||||||| || || | | ||| | || Sbjct 574508 CTTGAGGCCCTTCTTCCACCCGTAGAAGTGCATGCTCGTCA--ACTG-GCCCGTCG--TC 574454 Query 145839 GGCGAC-----AAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCG 145893 |||||| || ||| || || ||||| |||||||| | | |||||||| Sbjct 574453 GGCGACTGCAGGTGCACATTGAGGCTCTGACTCTGGTCAATGAACGCCCCACGGTCGGCA 574394 Query 145894 GCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACG 145953 |||||||| | || |||| | || ||||| | || || ||| ||||||| Sbjct 574393 GCCATGTCGAGAATTTTCTTTTGGCTGATCTCCCAGACCGTCTTGTAGATCGCCTTGACA 574334 Query 145954 TGCTGGGGTATTTCGTCAATGTTCTGCACAGACCC 145988 | | ||| || || ||||||||||| || || Sbjct 574333 TCGTCGGGGATACCGGGGATGTTCTGCACGGAGCC 574299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499456710240