Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq199 120 3e-22 seq57 116 3e-21 seq1 96.9 3e-15 >seq199 Length=104010 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | || ||| || || || || ||||| || || ||||| || | Sbjct 100909 CCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAG 100850 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| || || || ||| | |||| || |||||||| |||||| Sbjct 100849 AGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGA 100790 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || ||||| || || |||| || | || | |||||| || |||||||| Sbjct 100789 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGACGACTCGAC 100731 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| | ||| ||||| || | ||| || || ||||| ||||| Sbjct 100730 TTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 >seq57 Length=802683 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | || ||| || || || || ||||| || || ||||| || | Sbjct 363419 CCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAG 363360 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || |||| || || || ||| | ||||| || |||||||| |||||| Sbjct 363359 AGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 363300 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| ||||| ||||| || |||| || | |||||| || |||||||| Sbjct 363299 ATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACC 363240 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||| ||||| || | ||| || || ||||| ||||| Sbjct 363239 TCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||||||||| ||||| ||||| || || ||| || ||| || || | Sbjct 363120 AGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGC 363061 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | ||||| || || |||||||| || |||||||| || || || || Sbjct 363060 TGCTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC 363001 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | ||||||||||||||||| || || |||| || || || Sbjct 363000 TTCGCCTTAA-CGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCC 362942 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || || || |||||||| ||| || Sbjct 362941 TGTCAGAGTCTTGACGAAGATTTGCATACCGCCAC 362907 >seq1 Length=2270075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| |||| | || ||||| ||||| || ||||| ||||| || || ||| Sbjct 785866 ATGCCACCGCGCAGCCGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCG 785925 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | || | |||||||| ||||| Sbjct 785926 GACAACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGA 785985 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || || | || | || | ||||| |||||||| Sbjct 785986 GGAATACCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTGTCGATCGTGTCAGAAGACTC 786044 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACC 45349 ||||||||| || | ||| ||||| || || || || || || || ||||| ||| || Sbjct 786045 GACTTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATTCCGCCACG 786104 Query 45350 AA 45351 || Sbjct 786105 AA 786106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||| || || || ||||| ||||| || ||||| | || || || |||| Sbjct 785434 AGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGC 785493 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || | || | |||||||| ||||| || || || || || |||||||| Sbjct 785494 TGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAATC 785553 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | |||||| ||||||||||| ||||| || | ||| ||||| Sbjct 785554 TTCGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCC 785612 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || || || ||||| Sbjct 785613 AGTCAATGTTTTGACGAAGATCTGCAT 785639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001923090960