Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq57 134 2e-26 seq199 132 5e-26 >seq1 Length=2270075 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || || || | || |||||||||||||| || || Sbjct 786413 CTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAA 786472 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||||| |||| || | | |||||||||| ||||||| ||| | | Sbjct 786473 GATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 786532 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| ||| || || || | |||||| || |||||||| || || || || Sbjct 786533 ATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTCTTGCCCGTGAGTGTCTTGAC 786592 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 786593 AAAGATCTGCAT 786604 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||||||||||| || |||||| ||||||||||| || | Sbjct 785639 TGCCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCG 785698 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| || |||||||| || ||||| || | ||||||||||| | | Sbjct 785699 AGAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAG 785758 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||||| ||||| | | | |||||| || || | Sbjct 785759 GGATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGA 785818 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| ||||| || || || || || || |||||||| ||||| Sbjct 785819 CCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | || || | || ||||||||||| || ||||| Sbjct 785904 CTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAA 785963 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| ||||| || | || | | |||||||||| |||||| ||| | ||| Sbjct 785964 GATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 786022 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||| || |||||||| || || |||| Sbjct 786023 TGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAA 786082 Query 46581 CAAAGATTTGCATT 46594 | ||||| |||||| Sbjct 786083 CGAAGATCTGCATT 786096 >seq57 Length=802683 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | ||||||||||| || || || ||||| || ||||| || | Sbjct 363408 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACC 363349 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| ||||||||||||||||| | ||| | || ||||| Sbjct 363348 GTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 363289 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | ||||| ||| || || || | ||||| Sbjct 363288 ATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGAT 363229 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||||||||| || || || || || |||||| Sbjct 363228 CGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||||| || |||||||| ||||| ||||||||||| || || ||| |||| || ||| Sbjct 363120 AGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGC 363061 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||||| || ||||| ||||| ||||| ||||| | || | || ||||||||| |||| Sbjct 363060 TGCTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC 363001 Query 46508 TTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||| | ||| | | | |||||| || || || || | || || || || || Sbjct 363000 TTCGCCTTAA-CGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCC 362942 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || ||||||||||| Sbjct 362941 TGTCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 || || | ||| ||||| || ||||| ||||| ||||| || || || |||| || ||| Sbjct 362562 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 362503 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| ||||| || | ||||||||| || | || | | |||||||||| |||| Sbjct 362502 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 362443 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 || ||| | | | | ||||| || ||||| || | ||||||||| ||||| Sbjct 362442 TTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCA 362383 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| ||||| Sbjct 362382 GTAAGGGTCTTGACGAAGATCTGCAT 362357 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || ||||||||| | || ||||||||||||||| Sbjct 362269 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 362210 Query 46457 GCGAATATCAAGCGCTGCTGGTCGG 46481 ||||| || | ||| |||||||||| Sbjct 362209 GCGAAGATGAGGCGTTGCTGGTCGG 362185 >seq199 Length=104010 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||||| || |||||||| || || |||||||| || || || ||| |||| |||||| Sbjct 100610 AGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGC 100551 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| ||||| ||||| ||||| ||||| | || | || ||||||||| |||| Sbjct 100550 TGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC 100491 Query 46508 TTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||| | ||| | | | |||||| || || || || | || || || || || Sbjct 100490 TTCGCCTTAA-CGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCC 100432 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || ||||||||||| Sbjct 100431 TGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 129 bits (142), Expect = 7e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | ||||||||||| || || || ||||| || || || || | Sbjct 100898 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACC 100839 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| |||| |||||||||||| | ||| | || ||||| Sbjct 100838 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 100779 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||||| ||||| ||| | | | ||||| ||| || || || | |||| Sbjct 100778 GTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGA 100720 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || |||||||||| || || || || || |||||| Sbjct 100719 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 || || | ||| ||||| || ||||| ||||| ||||| || || || |||| || ||| Sbjct 100054 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 99995 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| ||||| || | ||||||||| || | || | | |||||||||| |||| Sbjct 99994 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 99935 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 || ||| | | | | ||||| || ||||| || | ||||||||| ||||| Sbjct 99934 TTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCA 99875 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| ||||| Sbjct 99874 GTAAGGGTCTTGACGAAGATCTGCAT 99849 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || ||||||||| | || ||||||||||||||| Sbjct 99761 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 99702 Query 46457 GCGAATATCAAGCGCTGCTGGTCGG 46481 ||||| || | ||| |||||||||| Sbjct 99701 GCGAAGATGAGGCGTTGCTGGTCGG 99677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236803201520