Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq172 197 2e-45 seq79 178 2e-39 >seq172 Length=1254375 Score = 197 bits (218), Expect = 2e-45 Identities = 259/359 (72%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | ||| || || || ||||| || || || || |||||||| Sbjct 347162 ATCGAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCCTTCACCTCGAAGATACC 347221 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | || ||| ||||| || ||||| ||||| || || || ||||| || Sbjct 347222 CTCCTCGATCGTGAGCAGCGATACATCGAAGGTACCGCCACCGAGATCGAAGATGAGGAC 347281 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || | || | ||||| ||||||||||| ||||| || || ||||| || || Sbjct 347282 GTTGCGCTCACCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGCTGCTGCCGTCGGCTC 347341 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| ||| || ||||||||||| || | || || || || || || || Sbjct 347342 GTTGATGATACGGAGAACATTGAGGCCAGCAATGGTACCGGCGTCCTTGGTTGCCTGACG 347401 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || || || |||| |||||| || | || || Sbjct 347402 CTGAGAGTCGTTGAAGTAGGCGGGGACAGTGACAACAGCGTTCGTGACGGTCGTGCCAAG 347461 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || || || || | || ||||| || || ||||| || || ||||| |||| || Sbjct 347462 GTAAGACTCGGCCGTCTCCTTCATCTTCAGGAGGACCATTGACGAGATCTCCTCAGGCG 347520 Score = 174 bits (192), Expect = 2e-38 Identities = 534/822 (65%), Gaps = 8/822 (1%) Strand=Plus/Plus Query 6575 TCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTC 6634 ||| | || ||||| || || || | ||||||| || || || || ||||| || | Sbjct 346222 TCACCCTTGTACTTCTCGGCCTCGTTGACCATCCGCTCGATCTCCTCCTTCGACAAGCGA 346281 Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || ||||| || ||| | ||| || || | | ||| || | || Sbjct 346282 CCCTTGTCGTTGGTAATGGTGATCCGGTTGGACTTGCCGGTCGTCTTGTCAGCGGCCGAG 346341 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || || | |||||| || || || | |||||| | || | ||||| || ||| | Sbjct 346342 ACGTTGAGAATACCGTTGGCGTCGATATCGAAGGTGACCTCGATTTGAGGAACACCACGA 346401 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||||| || | | || || | ||||| | |||| ||| ||| | | Sbjct 346402 GGCGCCGGCGGAATGCCAGAGAGCTCGAACTTGCCAAGGAGGTTGTTGTCCTTCGTCCGC 346461 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 ||| ||||| || ||||| | || || | || || || || || ||| Sbjct 346462 GCACGCTCACCCTCGTAGACCTGGATGAGAACACCCGGCTGGTTGTCGGAGTAGGTCGAG 346521 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 ||||| | ||||| | || | ||||| || | | |||| | |||||| | | Sbjct 346522 AAGATCTCGGACTTCTTCGTCGGGACAGTCGTGTTCCGCTTGATAAGGGCGGTCATGACA 346581 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG---TCT 6991 |||||| ||||||| || || || || || | || || ||| || ||| || Sbjct 346582 CCACCCGCGGTTTCGATACCGAGTGAGAGGGGCGCAACATC---GAGCAAAAGGAGATCC 346638 Query 6992 TGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 ||| || | || || | | |||||||| || || | || ||||| ||| Sbjct 346639 TGAGTCTTCTCCGACGTATCGCCGGAGAGAATGGCGGCCTGTACGGCGGCACCGTAAGCG 346698 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111 || ||||| ||||||||||| | || || | || || ||||| || | || || | | Sbjct 346699 ACGGCCTCGTCGGGGTTAATGCTCTTGTTGGGCTCCTTGCCGTTGAAGAAGTCAGAGACC 346758 Query 7112 -ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTT 7170 | || || || |||||||| || ||||| |||||||| | |||||| || | || | Sbjct 346759 AACTTCATG-ATCTTCGGGATACGAGTCGAACCACCGACAAGAACGATCTCGTGGACCTG 346817 Query 7171 CGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAA 7230 || |||||||| ||||| || || || ||||| || || | | | ||||| Sbjct 346818 GCTCTTGTCGATCTTCGAGTCCCGGAGGACCTTCTCGACGGGCTCGAGAGTGCTGCGGAA 346877 Query 7231 CAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCC 7290 | ||| | || || ||||| || || ||||| || | || || ||||| || | || Sbjct 346878 GAGGTCGTTGCAAAGCTCCTCGAACCGCGCACGCGTGAGCGAGGTGTAGAAGTCGATACC 346937 Query 7291 GTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGC 7350 ||| | | || ||||| ||||||| || || | | || || | || ||||| || Sbjct 346938 CTCGAAAAGAGAGTCAATCTCAATGGACGTCTGGGTGGCGGAGGAGAGTGTACGCTTAGC 346997 Query 7351 GCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 ||||| || ||||| || | ||||||||| ||||| ||||| Sbjct 346998 ACGCTCGCAAGCCGTGCGAAGACGACGAAGAGCACGGGGGTT 347039 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 || ||||| | ||||||| |||| ||||| | |||||||||||||| || || Sbjct 347657 TTGATATCCGCCTGGACCTCGGGGTCACTGAACTTGCGACCGATAAGACGCTTCGCGTCG 347716 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | ||||||||| || ||||||||| || || || ||||| | || Sbjct 347717 AAGACGGTGTTGTGGGGGTTCATCGCGACTTGGTTCTTTGCGGCATCGCCGATTAACCGC 347776 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || | ||| ||||| || ||||| || || || |||||||| || Sbjct 347777 TC---GCTGTCAGAGAAAGAGACATACGAGGGCGTCGTGCGGTTGCCCTGGTCGTTGGCG 347833 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || || || ||||| |||||||| |||||||| Sbjct 347834 ATGATCTCAACACGATCGTTCTGCCAGACACCGACGCA 347871 >seq79 Length=745380 Score = 178 bits (196), Expect = 2e-39 Identities = 478/722 (66%), Gaps = 22/722 (3%) Strand=Plus/Plus Query 7012 ACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAAT 7071 ||| || | || ||| || ||||| | || ||||| || || ||||||||||||||||| Sbjct 249340 ACCAGTAAGGACGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTAAT 249399 Query 7072 CGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGAT 7131 || || ||||||| ||| || || || || | | ||||| || ||||| Sbjct 249400 CGACTTGTTCAGTTGACGGCCGCCGAAGTACTCGGAGACGAGCGACTGAATCTTGGGGAT 249459 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG----ATCTTTG 7187 || ||||| |||||||| | ||||| |||| ||| ||| | || ||||| | Sbjct 249460 ACGAGTCGAACCACCGACAAGGACGATGTCATCCACCTTC----TCGCGGGGCATCTTCG 249515 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC---ATTTACGGAACAAGTCCATACACA 7244 || || ||||| || || | | | || || | | | | | Sbjct 249516 CATCCTTGAGCACCCGCTCGACGGGGTCAAGAGTGGACTTGAAGAGCGCGGCGTTGATC- 249574 Query 7245 GTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAAT 7304 |||||||||||||||||||| ||| | |||| || | || | ||| | || | Sbjct 249575 --TCCTCAAAACGTGCACGGGTGATGTTCGCCGAGAAGTCCTCACCCTGGTAGAGAGAGT 249632 Query 7305 CAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 | | |||| ||| || || || || | || | || ||||| || ||||| || || Sbjct 249633 CGACCTCAACGGTGGTCTGGGTGACGCTG--GAAAGGGTGCGCTTGGCACGCTCGCAAGC 249690 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 | || || || || || ||||| | | ||||||| || | |||| || || | Sbjct 249691 ACTGCGCAACCGCCGGAGAGCACGGGCATCGTCGGAAATGTCGTGCTTAGTCTTGCGCTG 249750 Query 7423 AAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 ||||| | |||||| |||| ||| | ||||| || |||||||| | || | Sbjct 249751 GAACTCCTTCTTGAAGTGCTCGAGCAAGT-TGTTGTCGAAGTCCTCACCACCAAGATGGG 249809 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || ||||| || ||||| | |||| ||| || ||||||| | | || |||| Sbjct 249810 TGTCGCCAGCGGTAGCCTTGACAGCGAAGACACCACCGACAATGTTGAGGAGAGAGACAT 249869 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC-GTCTTTGTTCTTA 7600 | || || || || || || || || ||||| |||||| | ||| | ||| || | | Sbjct 249870 CGAAGGTTCCTCCGCCAAGATCGAAGATGAGAACGTTCTTCTCGCCAGTCGAGGTGCG-A 249928 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 ||||||||||| ||||| ||||| ||||| || || || || ||||| ||| || || Sbjct 249929 TCGAGACCGTAAGCGATGGCCGCAGCCGTGGGCTCGTTGATGATACGGAGAACGTCGAGA 249988 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||| ||||| | ||||| || || || || || |||||||| |||||||| || Sbjct 249989 CCAGCGATAGTACCAGCATCCTTGGTAGCCAAACGCTGGGAATCGTTGAAGTAGGCAGGC 250048 Query 7721 AC 7722 || Sbjct 250049 AC 250050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131005749840