Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq199 123 2e-23 seq57 113 3e-20 seq1 93.3 3e-14 >seq199 Length=104010 Score = 123 bits (136), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||||| || ||||| ||||||||||| ||||| | || | || || Sbjct 100335 ACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTC 100276 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || || ||||||||||| |||| | ||||||||||| Sbjct 100275 GAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTG 100216 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| |||||| | || | ||| || || || || | ||| ||||| || Sbjct 100215 AATCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTT 100156 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || || |||||||| Sbjct 100155 GCCCGTGAGCGTCTTGACGAAAATCTGCAT 100126 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 || || || |||||||||||||||||||| || | || |||| |||||||| || || Sbjct 100879 GTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACCATCTTCCAGCTGCTTGCCA 100820 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || |||||||| |||| | || |||||||| |||||| ||| Sbjct 100819 GCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCTTGGATCTTCGCCTTG 100760 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | ||| | ||| || |||| || || || || ||||| | |||| Sbjct 100759 ACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGATCGTCTTGCCCGTCAAAGTC 100700 Query 34965 TTCACAAAGATCTGCAT 34981 ||||| || |||||||| Sbjct 100699 TTCACGAAAATCTGCAT 100683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| |||||| |||||||| ||||| || || || || | ||| | || || Sbjct 100058 ACCAAGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTC 99999 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || ||||| || | || | ||||||||||| Sbjct 99998 TAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTG 99939 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||| || || || | ||||| | ||| | ||| || |||| || |||| Sbjct 99938 GATCTTGGCCTTCAC--AT--TGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGG 99883 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || ||||| || ||||||||||| Sbjct 99882 TCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 99849 >seq57 Length=802683 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||||||||| ||||| | || | || || || || || || Sbjct 362830 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 362771 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| |||| | ||||||||||| ||||||| ||| Sbjct 362770 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTTCGCCTTG 362711 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | ||| | || || || | ||| ||||| || |||||||| ||| Sbjct 362710 ACGTTGTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCCGTGAGCGTC 362651 Query 34965 TTCACAAAGATCTGCAT 34981 || || || |||||||| Sbjct 362650 TTGACGAAAATCTGCAT 362634 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 || || || |||||||||||||||||||| || | || | || |||||||| || || Sbjct 363389 GTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCA 363330 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | || |||||||| |||| | || ||||| || ||||||| ||| Sbjct 363329 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCCTGAATCTTCGCCTTG 363270 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | ||| || |||| || || || || ||||| | Sbjct 363269 AC--AT--TGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTCTTGCCCGTCAA 363214 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||||||| || |||||||| Sbjct 363213 AGTCTTCACGAAAATCTGCAT 363193 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| |||||| |||||||| ||||| || || || || | ||| | || || ||||| Sbjct 362560 GTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTG 362501 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || || || ||||| || | || | ||||||||||| ||||| Sbjct 362500 CTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTT 362441 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 || || || | ||||| | ||| | ||| || |||| || ||||| || | Sbjct 362440 TGCCTTCAC--AT--TGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGC 362385 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| || ||||||||||| Sbjct 362384 CAGTAAGGGTCTTGACGAAGATCTGCAT 362357 >seq1 Length=2270075 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || ||||| ||| | || | || || ||||| || || || || Sbjct 785677 TCCTTCTGGATATTGTAATCCGAGAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAG 785736 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 785737 ATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTGAC--AT 785794 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | || ||||| || || ||||||||||| Sbjct 785795 --TGTCGATCGTGTCCGATGACTCGACCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTT 785852 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 785853 CACAAAGATCTGCAT 785867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | | || |||| || ||||| || || || || Sbjct 785905 TCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAAG 785964 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||||||||| ||||||| || ||| Sbjct 785965 ATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 786024 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || || |||||||| ||||| || Sbjct 786025 TCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAACG 786084 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 786085 AAGATCTGCAT 786095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| || || | || | || |||| ||| Sbjct 786173 GTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAACTG 786232 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || || || ||||| || | || | |||||||| || |||||| Sbjct 786233 CTTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTGAATCTT 786292 Query 34898 CTGTTTGACGGATGCTATCGATT----CACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 || || || | |||||| || | ||| || || | || || || |||| Sbjct 786293 AGCCTTAAC--AT--TGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTCTTTC 786348 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||||||| ||||||||||||||| Sbjct 786349 CCGTGAGAGTCTTGACAAAGATCTGCATA 786377 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || |||||||| | | | || |||||||| || || ||||| Sbjct 785449 TCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCAGCTGCTTCCCCGCAAAG 785508 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||||||||| ||||||| || ||| Sbjct 785509 ATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAATCTTCGCCTTCACGTTG 785568 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || |||| ||| || || || || || | || || || Sbjct 785569 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAATGTTTTGACG 785628 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 785629 AAGATCTGCAT 785639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632705837328