Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq183 123 2e-23 >seq183 Length=1202715 Score = 123 bits (136), Expect = 2e-23 Identities = 192/272 (71%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGAA 30173 ||||| || || ||| ||| | |||||| || | || ||| ||||||| || ||||| Sbjct 46801 AGCTGGTCGACGCCCTGCCCGGTGTAGTCCGCGTCGCA-GTCTGTGTACTTCGCGCCGAA 46859 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 |||||||||||||| || |||||||| ||||||||||| ||| ||| ||| | | || Sbjct 46860 GTGCCTCCACTGGAAGCCATACACCGGGCCCAGGTCTCCTTCTCTCCTATGCCCCAGTCC 46919 Query 30234 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 30293 | ||| || | || || || || || | ||||| ||||| | |||||| |||| Sbjct 46920 ACGCTTCTCGAGGAATTCCTTGCTCCCATTCCCATCCCAAATCTTGATGCCCTTCGCGGA 46979 Query 30294 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 || ||||| | || || || | || |||||| ||||| ||||||| | | Sbjct 46980 CAGAAGCTTGGAATCAGTCGAGCCGCGGATGAACCATAGCAGTTCCTCCAGAATACCGCG 47039 Query 30354 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||||| | ||| |||||||| || |||| Sbjct 47040 CCAAAATGTGCGCTTTGTCGTGAGAAGAGGAA 47071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616474513898