Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq57 102 5e-16 seq199 100 2e-15 seq1 93.3 3e-13 >seq57 Length=802683 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || |||||||| |||||||| || || ||||| || ||||| || || || |||||| Sbjct 362788 TCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTG 362729 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| ||||| || || ||||||| || | | ||||||||||| Sbjct 362728 TCTTGAATCTTCGCCTTGACGTTGTCGATGGTATCAGATGATTCGA-CCTCAAGGGTAAT 362670 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| |||||||| || Sbjct 362669 GGTCTTGCCCGTGAGCGTCTTGACGAAAATCTG 362637 >seq199 Length=104010 Score = 100 bits (110), Expect = 2e-15 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || || || || | ||||| || | || || | | || || | Sbjct 100333 CAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGA 100274 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||| |||||||| || || ||||| || ||||| || || || ||||||||||||| Sbjct 100273 GTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAA 100214 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 |||| ||||| || || ||||||| | | || |||||||| || || | Sbjct 100213 TCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTTGC 100154 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| |||||||| || Sbjct 100153 CCGTGAGCGTCTTGACGAAAATCTG 100129 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || || || || ||||| || || || ||||| || | || || Sbjct 100903 CGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTA 100844 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||| || || || || || || ||||| ||||| ||| Sbjct 100843 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCT 100784 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| ||||| || || || |||| | | | ||| || Sbjct 100783 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGA-CTTCGAG 100725 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | |||||| |||||||| || Sbjct 100724 AGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTG 100686 >seq1 Length=2270075 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||| ||||| || || ||||| || || |||||||| || || |||||| Sbjct 785713 TCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTG 785772 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| |||||| || || || || | || | | | ||| ||||| Sbjct 785773 TCTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAA-CGTAAT 785831 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| || || || || Sbjct 785832 GGTCTTCCCGGTGAGAGTCTTCACAAAGATCTG 785864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268169505763448