Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 1e-14 seq144 89.7 2e-12 seq150 87.8 5e-12 >seq1 Length=2270075 Score = 96.9 bits (106), Expect = 1e-14 Identities = 112/148 (76%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| |||||||| || ||||||||||||| || ||| | | || | Sbjct 1506116 CGATTGTCATACGCGACGGAATAGCGTGAGGATTGATGATGAGATCCGGTGTGATACCCT 1506175 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTC 251959 ||||||||||||||||||| ||||| | || || | ||||| || ||||| || | Sbjct 1506176 CAGCAGTGAAGGGCATATC---TTCCTGACGGTACGTGATACCAATGGTACCCTTCTGAC 1506232 Query 251960 CGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||| || |||||| ||||| || Sbjct 1506233 CGTGACGGGACGCGAACTTGTCACCGAT 1506260 >seq144 Length=659063 Score = 89.7 bits (98), Expect = 2e-12 Identities = 204/300 (68%), Gaps = 14/300 (5%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | ||| |||||||||||||| ||| | || || ||||| ||||| || ||| Sbjct 619119 TTGACGAGACGCCGCTGAATATAACCTGTTTCGGCCGTCTTGACAGCGGTATCGATCAGA 619060 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || | || ||| |||| || |||||||| | || | ||| || || | | || Sbjct 619059 CCCTCTCGTCCAGCCATGGCGTGGAAGAAGAATTCCTGAGGTGTCAGGCCACGGAGGTAG 619000 Query 302704 GAGCTCTCAACGAAACCACGCGCCT-CGGGC-GAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||| | || ||||| || || |||| ||||| ||| |||| ||||||||| || || | Sbjct 618999 GAGTTTTCTACGAATCCGCGGGCCTCCGGGCTGAA--GTCGTCCTTGGTAAAATGAGGAA 618942 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | || ||||| | || ||||| || || ||| ||||||| || | | Sbjct 618941 GCGTGCGGTGGCGGAAGCCGAAAGGAATACGGCGACCTTCGACGATCTGCTGGCCAACAC 618882 Query 302822 A---CGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||| ||||||||| || || | || | ||||| |||||||| | ||||| Sbjct 618881 AGACCGA---CATCTGCGAGATGTTGATGAAGGA--ACCCTTCGAGCCAGCCGTCACCAT 618827 >seq150 Length=1432513 Score = 87.8 bits (96), Expect = 5e-12 Identities = 218/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 133339 GATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATAC 133398 |||||| || || ||||| |||||||| || || || || |||||||| || | Sbjct 453500 GATGGAGAACATTCATTCCGAGACATATTCGCTGCTCATCGACACGTACATCAAGGAC-C 453442 Query 133399 CGTCCAGAAGC---ACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGA 133454 || || ||| || ||||| ||||||| | || | | || || || || |||| Sbjct 453441 CG--CAAGAGCGAGACCGCCTATTTGACGCCATC-GAGACAATACCGTGCATCAAGAAGA 453385 Query 133455 AATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCG 133514 | | || |||||| | ||||| ||||||||| | ||||||||| || || | Sbjct 453384 AGGCGGATTGGGCTCTCCGCTGGATATCGGACAAGCGGTCAAGTTTTGCTGAGCGACTAG 453325 Query 133515 TTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGG 133573 | || || || | ||| ||||| || || ||| || | || |||| | || |||||| Sbjct 453324 TGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCTCCGGCTCATT-TGCTGCCATATTTTGG 453266 Query 133574 CTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGAC 133633 ||||| ||||| || | | || || ||| || || ||||| || || | ||| Sbjct 453265 CTTAAGAAGCGCGGGCTCATGCCCGGGCTGACGTTCTCCAACGAGCTGATAATCCGCGAC 453206 Query 133634 GAGGCACTTCACACCGAATTTGC 133656 |||| | | |||||||| ||||| Sbjct 453205 GAGGGAATGCACACCGATTTTGC 453183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813338168162