Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq199 104 2e-17 seq57 98.7 8e-16 >seq1 Length=2270075 Score = 109 bits (120), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 29578 ACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||||| |||||| || || || || || ||||| ||||||| || || | | || || Sbjct 785430 ACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTC 785489 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 || || || || ||| | || | | |||||||||||| || |||||||| |||||||| Sbjct 785490 CAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTG 785549 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | || || | || | ||||||||| || || || || || || || | Sbjct 785550 -AATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCT 785608 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || ||||| || || |||||||| Sbjct 785609 TGCCAGTCAATGTTTTGACGAAGATCTGCAT 785639 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||||||||| || || || || ||||| || || | | || || | Sbjct 785881 CGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCA 785940 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || ||||| | || | | |||||||||||| ||||||||||| ||| Sbjct 785941 TCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTG 786000 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || || | || | ||||||||| || ||||| || || || Sbjct 786001 TCCTG-AATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGAT 786059 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| ||||| || ||||||||| Sbjct 786060 CGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATT 786096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || || ||||| ||||| | | || ||| ||| ||||| || Sbjct 786402 TGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCCTCGAGCTGC 786461 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| ||| | ||||| | |||||||| || ||||||||||| ||||| || | || Sbjct 786462 TTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 786521 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| || || || || || || || || ||||| || Sbjct 786522 GCCTTCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTCTTGCCCGTG 786581 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| |||||||| Sbjct 786582 AGTGTCTTGACAAAGATCTGCAT 786604 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||||||||| || || || ||||| || || | | || || || || | || Sbjct 786174 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAACTGC 786233 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| ||| | |||| | ||||||||||| || || ||||| || || || ||| || Sbjct 786234 TTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTG-AATCTT 786292 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | |||||||| || || || ||||| ||||| || || || Sbjct 786293 AGCCTTAACATTGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCCGT 786352 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| |||||||| Sbjct 786353 GAGAGTCTTGACAAAGATCTGCAT 786376 >seq199 Length=104010 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | || || || || || ||||||||||| |||| | || ||| Sbjct 100898 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACC 100839 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | |||| | ||||| || |||||||| || || || Sbjct 100838 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 100779 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||| | || | |||||||| || ||||| ||||| || Sbjct 100778 GTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGAT 100719 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || || || || || ||||||||| Sbjct 100718 CGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||| ||||| || ||||| ||||| | | || || || || || || Sbjct 100051 TGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGC 99992 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | ||||||||||| ||||||||||| ||||| || | || Sbjct 99991 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTG 99932 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| || || ||||| || || || || |||||||| Sbjct 99931 GCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTA 99872 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 99871 AGGGTCTTGACGAAGATCTGCAT 99849 >seq57 Length=802683 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | || || || || || ||||||||||| |||| | || ||| Sbjct 363408 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACC 363349 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | ||||| | ||||| || |||||||| || || || Sbjct 363348 GTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 363289 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | |||||| | || | |||||||| || || || ||||| | Sbjct 363288 ATCCTG-AATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGA 363230 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || || || || || || ||||||||| Sbjct 363229 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||| ||||| || ||||| ||||| | | || || || || || || Sbjct 362559 TGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGC 362500 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | ||||||||||| ||||||||||| ||||| || | ||| Sbjct 362499 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTT 362440 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| ||| || ||||| || || || || |||||||| Sbjct 362439 GCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTA 362380 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 362379 AGGGTCTTGACGAAGATCTGCAT 362357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218138961866