Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq143 194 2e-44 seq150 138 1e-27 >seq143 Length=661151 Score = 194 bits (214), Expect = 2e-44 Identities = 424/627 (68%), Gaps = 26/627 (4%) Strand=Plus/Minus Query 78545 TCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCA 78604 ||||||| |||||||| ||||||||| |||| ||||| ||||| || ||||||| Sbjct 574120 TCGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGACTTGTCGACGCTGTCGGCA 574061 Query 78605 TGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG---ATCTCGACCTTTAG-- 78659 | || || || || || || |||| || || |||||| | || |||| || Sbjct 574060 TAGGCGCAACAAGAAGCGAGTTCCTCAGGCC---CGTCTTCGCCACCTTCTCCTTGAGCG 574004 Query 78660 --GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 ||| |||||| || || | | || | ||||||| ||| ||||| |||| Sbjct 574003 ATGCCCAGTCCCACAAGTCTGTTGGCGTAACACCCCACAGGTCATACTGAAGCTGGCCCT 573944 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC---GC 78772 ||| || || |||| | |||||||||| | || || || |||| || || Sbjct 573943 GGGATGCAGGACTGCCCTGGTACGTCTCGTATGGACCATCGACCGCAGCGATCTCACTGC 573884 Query 78773 ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832 | ||||| | || || ||||| | | ||| ||| | ||||||||| || || | Sbjct 573883 TCGCCTCGACC---GCAGCATGGTATATCGTCTCCGCGATCCTCTTGTTGAGGTCACGTG 573827 Query 78833 CCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 | | || | |||||| | | || ||| |||||| | ||||| |||||||| || | Sbjct 573826 CTTCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAAGCGTCGGCGAGGCCCTGCACAC 573767 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAA 78949 ||||| ||||||| ||||||||||||||| ||| ||||||| | ||||| Sbjct 573766 CGATACCGATCGGACGGTGGCGCATGTTG---GATCGACGAGCCTCGGGGATGGGGTAGT 573710 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 |||| ||| |||| ||||||||||| ||||||||| || | |||| || | Sbjct 573709 AGTTGATATCAATGATACGGTTCAGGTTGAAGGTGACGACCTTCGTAATATCGTGCAGCT 573650 Query 79010 TGGCGAA-ATCAAAATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTG 79068 | ||| | | | | | | | |||||||| || ||| | | || ||||||||| Sbjct 573649 TCTGGAAGTTGTAGACGCCATTC-TCGATGAAAGATGGCAGGGAGATGGAGGCCAGGTTG 573591 Query 79069 CACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGAC 79128 || || || || || || || || ||| | ||| |||||||| | ||| |||||| Sbjct 573590 CAGACAGCGGTTTCTTCAGGCGACGAGTACTCAACGATCTCTGTGCAGAGATTGGACGAC 573531 Query 79129 TTGATGGTGCCGATGTTCTTCTGGTTG 79155 |||||||| |||| ||||||||||||| Sbjct 573530 TTGATGGTACCGAGGTTCTTCTGGTTG 573504 Score = 179 bits (198), Expect = 4e-40 Identities = 419/628 (67%), Gaps = 12/628 (2%) Strand=Plus/Plus Query 19841 GCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 |||||||| || ||||||||| |||| | |||||||||||||| || || || || ||| Sbjct 573496 GCCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTCGTCCAATCTCTGCACAGAGATC 573555 Query 19901 ATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 | ||| || ||| || || || || || || || ||||| ||| | | |||||| Sbjct 573556 GTTGAGTACTCGTCGCCTGAAGAAACCGCTGTCTGCAACCTGGCCTCCATCTCCCTGCCA 573615 Query 19961 ACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTC 20020 ||||| || || | || | |||| || || |||| | || ||||||| Sbjct 573616 TCTTTCATCGAGAATGGCGTCTACAACTTCCAGAAGCTGCACGATATTACGAAGGTCGTC 573675 Query 20021 ACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAG 20080 || || ||||| || |||| ||| |||| ||||| | | | ||| || Sbjct 573676 ACCTTCAACCTGAACCGTATCATTGATATCAACTACTACCCCATCCCCGAGGCTCGTCGA 573735 Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || ||||||||||| ||||||| ||||| || |||||||| ||||||| ||||||| Sbjct 573736 TCCAACATGCGCCACCGTCCGATCGGTATCGGTGTGCAGGGCCTCGCCGACGCTTTCATG 573795 Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAG 20200 ||| || | | |||||| ||| | || || || ||||||||| | ||| ||| Sbjct 573796 GCCCTCCGCATGCCCTTCGACTCGCCCGAAGCACGTGACCTCAACAAGAGGATCGCGGAG 573855 Query 20201 GCCGTGTACCACGCGGCCCTCCTG--GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 | | ||||| || || || | || ||| || |||| | || || || | Sbjct 573856 ACGATATACCATGCTGCGGTCGAGGCGAGCAGTGAGA--TCGCTGCGGTCGATGGTCCAT 573913 Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCG 20318 ||||||||| | |||| || || ||| |||| || ||| ||| ||||||| | Sbjct 573914 ACGAGACGTACCAGGGCAGTCCTGCATCCCAGGGCCAGCTTCAGTATGACCTGTGGGGTG 573973 Query 20319 TCACTGAGAATGAGTTTTGGAGC------GCCCTCAAGGTTGAGATCAAGACCCACGGG- 20371 | || | || || ||| | | ||||||| || | || ||||| Sbjct 573974 TTACGCCAACAGACTTGTGGGACTGGGCATCGCTCAAGGAGAAGGTGGCGA-AGACGGGC 574032 Query 20372 CTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGG 20431 || | |||||| | || || ||||| |||||||| || ||||| ||||| |||| Sbjct 574033 CTGAGGAACTCGCTTCTTGTTGCGCCTATGCCGACAGCGTCGACAAGTCAGATTTTGGGC 574092 Query 20432 AACAACGAGGCTTTCGAGCCGTACACGA 20459 ||||||||| |||||||| ||||||| Sbjct 574093 AACAACGAGTGCTTCGAGCCTTACACGA 574120 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 || ||| || |||| ||||||||||| |||||||| ||||||||||| ||||| | ||| Sbjct 574538 GGGGCGGGTGCGCAGGTAGTACATGCCTGTCTTGAGGCCCTTCTTCCACCCGTAGAAGTG 574479 Query 78243 CATACTCGACAGCTTGGCCAGAC-TCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACT 78301 ||| |||| || | ||||| | | |||| || || | | ||||| ||| || Sbjct 574478 CATGCTCGTCAAC-TGGCCCGTCGTCGGCGACTGCAGGTGCACATTGAGGCTCTGACTCT 574420 Query 78302 GGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCC 78361 |||| ||| |||| || |||||||| |||||||||| | |||||| ||||||| Sbjct 574419 GGTCAATGAACGCCCCACGGTCGGCAGCCATGTCGAGAATTTTCTTTTGGCTGATCTCCC 574360 Query 78362 AGATGGTCCGGTAAATGGCCTT 78383 ||| ||| ||| || ||||| Sbjct 574359 AGACCGTCTTGTAGATCGCCTT 574338 Score = 111 bits (122), Expect = 2e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 || || | ||||||||| ||||| || |||||||| ||||||||||||||| || ||| Sbjct 572821 GCACAGTTCTTGAGCGTGTCGTAAATACCCTCGATGGAGTCGTCCTTCATACACACGAGG 572762 Query 79744 AAGC---AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 |||| |||| || ||| |||| ||| || || ||||| || || || | ||| Sbjct 572761 AAGCATGAGCT---CAGCTGGGGGTGTGGCGTGCCAGCATTGAACAGTGTGGGTGATGCG 572705 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 || |||||| | | |||||| | ||| ||||| | || ||| || |||| | Sbjct 572704 TGTGTGAAGTAACGGAGAGACATCAGGTTGTAGGTCTCGATCACTCGCTCGATGTCGGAG 572645 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGAC 79913 || || |||||||| || || ||||||| | || ||| || |||| |||| Sbjct 572644 CCATGAATGCCGACAGCAACACGCATGAGCATGTGCTGAGGACGCTCGGCGAC 572592 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 20605 TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCAT 20664 ||||||| | | |||||| || |||| ||| || ||||| ||| || |||| || Sbjct 574322 TATCCCCGACGATGTCAAGGCGATCTACAAGACGGTCTGGGAGATCAGCCAAAAGAAAAT 574381 Query 20665 CATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTT 20724 |||||||||| ||||| || || || | ||| |||||| ||| |||||||| Sbjct 574382 TCTCGACATGGCTGCCGACCGTGGGGCGTTCATTGACCAGAGTCAGAGCCTCAATGTGCA 574441 Query 20725 CATGGAGAATCCGA-GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGG 20783 | || || |||| | | ||| | | ||| |||||| | ||||| ||| | |||| Sbjct 574442 CCTGCAGTCGCCGACGACGGGCCA-GTTGACGAGCATGCACTTCTACGGGTGGAAGAAGG 574500 Query 20784 GGCTCAAGACGGGCATGTACTATCTGCGGACCCG 20817 | |||||||| ||||||||||| ||||| ||||| Sbjct 574501 GCCTCAAGACAGGCATGTACTACCTGCGCACCCG 574534 Score = 102 bits (112), Expect = 9e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 19394 GGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCC 19453 ||||| |||||| | | ||||| || || ||||| |||| | | || ||| Sbjct 572947 GGGACAAACGGATACTCAAATGGTATTGTTCCCATGCTACGCGCGTATGATGCAACCGCC 573006 Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513 |||| ||| |||| || ||| ||| ||| || | ||||| |||||||| |||||| Sbjct 573007 CGGTATGTCGACCAAGGTGGCAACAAGCGCCCCGGTGCATTCGCTATCTACCTAGAGCCA 573066 Query 19514 TGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG 19573 ||||| | ||| || | || ||||| || || ||| |||||| ||| | |||||| | Sbjct 573067 TGGCATGATGACATCTTCGAGTTCCTTGACCTCCGCAAGAACCATGGTAAGGAGGAGGTT 573126 Query 19574 CGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATT 19617 || ||||||||| ||| ||| ||| |||||||| || || || Sbjct 573127 CGTGCTCGCGACCTATTCTACGCACTT-TGGATTCCCGATCTCTT 573170 >seq150 Length=1432513 Score = 138 bits (152), Expect = 1e-27 Identities = 344/514 (67%), Gaps = 20/514 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 ||||||||| | ||||||||||| |||||| || ||||| | || ||| |||| | | Sbjct 455042 TCATTCTGGACGGTCGAGGAGATCGACCTCTCCAAGGACCTCCACGACTGGAACAACCGC 455101 Query 59673 AATTACGAC---GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 | ||||| |||| || |||||| ||||| || |||||||| || || Sbjct 455102 ATGAACGACAACGAGCGACACTTCATCTCCCATGTCCTTGCTTTCTTCGCCGCTTCCGAC 455161 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || || | || || | | | | || ||||| || || ||| || ||||| Sbjct 455162 GGCATCGTCAACGAGAACCTTGTCGAGCGTTTCTCCAACGAGGTACAGGCGGCTGAGGCG 455221 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | ||||||| | ||| | | ||| |||||||||||||||||||||||| Sbjct 455222 CGCTGTTTCTACGGCTTCCAGATTATGATGGAGAACATCCACTCCGAGACGTACTCGCTC 455281 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 | ||||| | | ||||||| || | || | || ||| |||||| || Sbjct 455282 CTCATCGACACCTACATCAAGGACCCTAAGCAGCGCGAGCACCTATTCGATGCCATCGAC 455341 Query 59910 ACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATG-------AGTC 59961 || ||||| ||| | || | || || || ||||| | | ||||| || Sbjct 455342 ACCATCCCCTGCA-TCAAGAAGAAGGCGGACTGGGCTCTCCGCTGGATCGCTGACAAGCG 455400 Query 59962 CTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTC 60020 | |||| ||||| | || || | || || || ||| || || || ||||||||| Sbjct 455401 GTCGAGC----TTTGCTGAGCGACTGGTGGCCTTCGC-TGCAGTCGAGGGTATCTTCTTC 455455 Query 60021 TCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 ||||| || || || | | || ||||||||||| |||||||| |||||||| ||||| | Sbjct 455456 TCTGGATCCTT-TGCGTCCATATTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTCAC 455514 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| |||||||| || ||| || |||||| Sbjct 455515 GTTCTCGAACGAGCTCATCAGCCGTGATGAGGGC 455548 Score = 111 bits (122), Expect = 2e-19 Identities = 324/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Minus Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| ||||||||| ||| |||||| | ||||| || |||||||| || ||| Sbjct 453646 CTCAACGACGACGAGCGGCACTTCATCTCGCACGTCCTCGCATTCTTCGCCGCCTCCGAT 453587 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || |||| || || | | | | ||| || || || || || ||| ||||| Sbjct 453586 GGCATAGTGAACGAGAACCTTGTCGAGCGCTTCTCGAATGAAGTGCAAGCTGCGGAGGCA 453527 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | ||||| | | || | | ||| || || |||||||| || ||||| Sbjct 453526 CGATGTTTCTATGGCTTCCAAATAATGATGGAGAACATTCATTCCGAGACATATTCGCTG 453467 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 | ||||| | || ||||||| ||| ||||| | | || || ||||| ||| Sbjct 453466 CTCATCGACACGTACATCAAGGACCCGCAAGAGCGAGACCGCCTATTTGACGCCATCGAG 453407 Query 59910 ACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC 59968 || | || ||| | || | || || || ||||| | | ||||| || ||| Sbjct 453406 ACAATACCGTGCA-TCAAGAAGAAGGCGGATTGGGCTCTCCGCTGGATA--TC--GGACA 453352 Query 59969 A----TCA---TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 | ||| ||||| | || || | || || || || || || |||||||||| Sbjct 453351 AGCGGTCAAGTTTTGCTGAGCGACTAGTGGCCTTCGCCGCAGTCGAGGGTATCTTCTTCT 453292 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | ||||| || ||| || || ||||| || ||||| || |||||||| || |||| | Sbjct 453291 CCGGCTCATTTGCTGCCATATTTTGGCTTAAGAAGCGCGGGCTCATGCCCGGGCTGACGT 453232 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTC 60140 |||||||||||||||| ||| |||||||| | || || |||||| || | |||| Sbjct 453231 TCTCCAACGAGCTGATAATCCGCGACGAGGGAATGCACACCGATTTTGCA-TGTCTGCTC 453173 Query 60141 TATTCACACCT 60151 ||| ||||| Sbjct 453172 TATCAGCACCT 453162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523250417440