Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq150 158 1e-33 seq143 104 3e-17 seq170 91.5 2e-13 seq144 86.0 7e-12 >seq150 Length=1432513 Score = 158 bits (174), Expect = 1e-33 Identities = 347/509 (68%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||| | ||| || | || ||||| |||| ||||| ||||| || |||||||| Sbjct 455548 GCCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTGAGGCCGGGCATGAGACCACGCTT 455489 Query 74828 CTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 ||| | ||| || |||| | || ||||| ||| ||||||||| || ||||| || | Sbjct 455488 CTTGAGCCAGAATATGGACGCA-AAGGATCCAGAGAAGAAGATACCCTCGACTGCAGCGA 455430 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCA----TCCAAGTCTGAGCCCAT 74942 |||| || || || | || || | | | || |||| |||| ||||||| Sbjct 455429 AGGCCACCAGTCGCTCAGCAAA-GCTCGACCGCTTGTCAGCGATCCAGCGGAGAGCCCAG 455371 Query 74943 TCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTC 74999 || || || |||| |||||| | || ||||| || | ||| ||| || || | Sbjct 455370 TCCGCCTTCTTCTTGAT-GCAGGGGATGGTGTCGATGGCATCGAATAGGTGCTCGCGCTG 455312 Query 75000 TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGAC 75059 ||| ||| ||||||| | |||| || | || ||||||||||| || || || | Sbjct 455311 -CTTAGGG-TCCTTGATGTAGGTGTCGATGAGGAGCGAGTACGTCTCGGAGTGGATGTTC 455254 Query 75060 TCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAA 75119 || | | |||| | |||||||| | |||||||| || |||||| || || || Sbjct 455253 TCCATCATAATCTGGAAGCCGTAGAAACAGCGCGCCTCAGCCGCCTGTACCTCGTTGGAG 455194 Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 ||| | | | | ||||| ||||||||||||| || |||||||| ||||| || || Sbjct 455193 AAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAAGCGGCGAAGAAAGCAAGGACA 455134 Query 75180 ATTTTGATAAAGTGGCGCTC---ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCC 75236 ||| ||||| ||||| |||| || | |||| ||| || | |||||| Sbjct 455133 TGGGAGATGAAGTGTCGCTCGTTGTCGTTCATGCGGTTGTTCCAGTCGTGGAGGTCCTTG 455074 Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | | || |||||||||||||||||||| Sbjct 455073 GAGAGGTCGATCTCCTCGACCGTCCAGAA 455045 >seq143 Length=661151 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||| |||||| |||||||| || |||| | | |||||| || Sbjct 574336 TCAAGGCGATCTACAAGACGGTCTGGGAGATCAGCCAAAAGAAAATTCTCGACATGGCTG 574395 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| |||| ||| |||||| ||| || || | | || || || Sbjct 574396 CCGACCGTGGGGCGTTCATTGACCAGAGTCAGAGCCTCAATGTGCACCTGCAGTCGCCGA 574455 Query 55848 C-ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | || ||||| ||||| |||||||| ||||||||||||||||| |||||||| || Sbjct 574456 CGACGGGCCA-GTTGACGAGCATGCACTTCTACGGGTGGAAGAAGGGCCTCAAGACAGGC 574514 Query 55907 ATGTACTATCTGCGGACCCGCGCC 55930 |||||||| ||||| |||||| || Sbjct 574515 ATGTACTACCTGCGCACCCGCCCC 574538 >seq170 Length=257206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| || || || | ||||| |||| ||||| | |||||||||||| || Sbjct 129847 CTCGTGGTTGAATAGGATTCCGTTGCACGCGTACATGCCGTATGCCTCGCGGTAGTTCTT 129906 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| ||||| || | | || || | || || || ||||| || |||||||| || || Sbjct 129907 CGTGATCCAGAACGCGTACAGTTTCGCAACTCCGTACGGGCTCCGCGGGTAGAACGGCGT 129966 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 |||| |||||| | | | | |||||| ||| ||||| || ||| || || Sbjct 129967 CGTTTCGCTTTGGGGCGTCTCCACGACCTTCCCGTACAGTTCCGACGTCGACGCTTGGTA 130026 Query 124892 GAA 124894 ||| Sbjct 130027 GAA 130029 >seq144 Length=659063 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| || || || ||||| || | || ||| || || | Sbjct 534353 GTTGGCGAGCTTGGCACCGTAACCATTACGGCCACCCGTAAGCTTCTTCTCATCATCATC 534412 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||||||| | ||| |||||||| ||||||||||| ||||| Sbjct 534413 GTAGTTGGAGGAAGACAAGAGGTGCCCGAAGATGAGCTCCGGGAT 534457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214454114800