Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq199 113 3e-20 seq57 105 4e-18 seq1 95.1 8e-15 >seq199 Length=104010 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | |||||||| |||||||| ||||||||||| || || || || || Sbjct 100900 AGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGA 100841 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | ||||| ||||| ||||| | || ||| Sbjct 100840 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCC 100781 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| ||||| | || Sbjct 100780 TTGTCTTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGT 100722 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || ||||| ||||||||||| Sbjct 100721 GATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 Score = 109 bits (120), Expect = 3e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || ||||||||||| |||||||| || || || || |||||| ||||||| Sbjct 100614 ACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTC 100555 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || || || || || ||||||||||||||||| || | || |||||||| Sbjct 100554 GAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTG 100495 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | |||||| | |||||||| ||| || || | ||| || || | Sbjct 100494 GATC-TTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || || || || || ||||| Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| || || ||||||||||| || |||||||| || ||||| || || |||| | Sbjct 100336 CACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCT 100277 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | ||||| || || ||||| || | || || ||||| ||||| | |||||||||||| Sbjct 100276 CGAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTT 100217 Query 34616 TGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 ||||| | || ||| | || || || | || || |||| ||| || || Sbjct 100216 GAATCTTC-GCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTC 100158 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || | ||| || || |||||||||||| Sbjct 100157 TTGCCCGTGAGCGTCTTGACGAAAATCTGCATG 100125 >seq57 Length=802683 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||||||||||| || ||||| || || || || |||||| ||||||| || || Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| || || || ||||||||||||||||| || | || |||||||| |||| | Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC-T 363000 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | |||||| | |||||||| ||| || || | ||| || || || || | Sbjct 362999 TCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTG 362940 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || || ||||| Sbjct 362939 TCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | |||||||| |||||||| ||||||||||| || || || || || Sbjct 363410 AGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGA 363351 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || || || || || ||||| ||||| ||||| | || ||| Sbjct 363350 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCC 363291 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | || || | || ||||| ||| || || | || Sbjct 363290 TTATC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGT 363232 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || ||||| ||||||||||| Sbjct 363231 GATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34510 GTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG 34569 ||||||||||| || |||||||| || ||||| || || |||| || ||||| || || Sbjct 362830 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 362771 Query 34570 GCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| || | || || ||||| ||||| | |||||||||||| ||||| Sbjct 362770 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTT 362718 >seq1 Length=2270075 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| ||| | || |||||| || || || ||||| || Sbjct 785640 GCCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGA 785699 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || || || || || | |||||| ||||| || || Sbjct 785700 GAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 785759 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTC 34655 | |||||||||||| ||| |||| || || | || ||||| || | ||| Sbjct 785760 GATGCCCTCCTTGTCT-TGAATCTTTGCCTTGACATTGTCGATCGTGTC--CGATGACTC 785816 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || ||||| | || |||||||| ||||||||| Sbjct 785817 GACCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCATG 785868 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || || |||||| || ||||| ||||| ||||| || | |||| || Sbjct 785430 ACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTC 785489 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || || ||||| || | ||| || || ||||| || | |||||||||||| | Sbjct 785490 CAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCT-T 785548 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || || | || ||| | || ||||| ||| || || | ||| ||||| | Sbjct 785549 GAATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCT 785608 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || ||||| || || ||||||||| Sbjct 785609 TGCCAGTCAATGTTTTGACGAAGATCTGCATG 785640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728733116658