Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06]
226 sequences; 43,856,698 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq199 113 3e-20
seq57 105 4e-18
seq1 95.1 8e-15
>seq199
Length=104010
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||| | |||||||| |||||||| ||||||||||| || || || || ||
Sbjct 100900 AGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGA 100841
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || || || || || | ||||| ||||| ||||| | || |||
Sbjct 100840 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCC 100781
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | || ||||| ||| ||||| | ||
Sbjct 100780 TTGTCTTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGT 100722
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || || || || ||||| |||||||||||
Sbjct 100721 GATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683
Score = 109 bits (120), Expect = 3e-19
Identities = 153/211 (73%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556
||||| ||| || ||||||||||| |||||||| || || || || |||||| |||||||
Sbjct 100614 ACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTC 100555
Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616
|| || || || || || || ||||||||||||||||| || | || ||||||||
Sbjct 100554 GAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTG 100495
Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675
|||| || | |||||| | |||||||| ||| || || | ||| || || |
Sbjct 100494 GATC-TTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || | || || || || || |||||
Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405
Score = 98.7 bits (108), Expect = 6e-16
Identities = 152/213 (71%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555
|||||| || || ||||||||||| || |||||||| || ||||| || || |||| |
Sbjct 100336 CACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCT 100277
Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615
| ||||| || || ||||| || | || || ||||| ||||| | ||||||||||||
Sbjct 100276 CGAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTT 100217
Query 34616 TGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674
||||| | || ||| | || || || | || || |||| ||| || ||
Sbjct 100216 GAATCTTC-GCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTC 100158
Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || | ||| || || ||||||||||||
Sbjct 100157 TTGCCCGTGAGCGTCTTGACGAAAATCTGCATG 100125
>seq57
Length=802683
Score = 105 bits (116), Expect = 4e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| || ||||||||||| || ||||| || || || || |||||| ||||||| || ||
Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||||| || || || ||||||||||||||||| || | || |||||||| |||| |
Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC-T 363000
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| | |||||| | |||||||| ||| || || | ||| || || || || |
Sbjct 362999 TCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTG 362940
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
| | || || || || || |||||
Sbjct 362939 TCAGAGTCTTGACGAAGATTTGCAT 362915
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||| | |||||||| |||||||| ||||||||||| || || || || ||
Sbjct 363410 AGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGA 363351
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || || || || || || ||||| ||||| ||||| | || |||
Sbjct 363350 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCC 363291
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || ||| || | || || | || ||||| ||| || || | ||
Sbjct 363290 TTATC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGT 363232
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || || || || ||||| |||||||||||
Sbjct 363231 GATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 34510 GTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG 34569
||||||||||| || |||||||| || ||||| || || |||| || ||||| || ||
Sbjct 362830 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 362771
Query 34570 GCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||||| || | || || ||||| ||||| | |||||||||||| |||||
Sbjct 362770 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTT 362718
>seq1
Length=2270075
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | |||||| | ||||| ||| | || |||||| || || || ||||| ||
Sbjct 785640 GCCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGA 785699
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || |||| ||||| || || || || || || | |||||| ||||| || ||
Sbjct 785700 GAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 785759
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTC 34655
| |||||||||||| ||| |||| || || | || ||||| || | |||
Sbjct 785760 GATGCCCTCCTTGTCT-TGAATCTTTGCCTTGACATTGTCGATCGTGTC--CGATGACTC 785816
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| |||| || || || || ||||| | || |||||||| |||||||||
Sbjct 785817 GACCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCATG 785868
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556
||||| ||| || || |||||| || ||||| ||||| ||||| || | |||| ||
Sbjct 785430 ACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTC 785489
Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616
|| || || || ||||| || | ||| || || ||||| || | |||||||||||| |
Sbjct 785490 CAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCT-T 785548
Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675
|| || | || ||| | || ||||| ||| || || | ||| ||||| |
Sbjct 785549 GAATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCT 785608
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || || || ||||| || || |||||||||
Sbjct 785609 TGCCAGTCAATGTTTTGACGAAGATCTGCATG 785640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728733116658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |