Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq199 111 1e-19 seq57 111 1e-19 >seq1 Length=2270075 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||| ||| | ||||| | || || || | || Sbjct 785868 CATGCAGATCTTTGTGAAGACTCTCACCGGGAAGACCATTACGTTGGAGGTCGAGTCATC 785809 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| ||| ||||||||||| || ||||| || || || || Sbjct 785808 GGACACGATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATCCCTCCTGACCA 785749 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || ||| || ||| | || |||||||| Sbjct 785748 GCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGTCGTACCCTCTCGGATTACAA 785689 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| || ||| |||| | ||| | || || ||||| Sbjct 785688 TATCCAGAAGGAGTCGACGTTGCATCTGGTGCTTCGTCTTCGCGGAGGCAT 785638 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || ||||| Sbjct 786604 ATGCAGATCTTTGTCAAGACACTCACGGGCAAGACAATCACGCTCGAGGTCGAGTCGTCC 786545 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || || ||||| || || || || |||||||| Sbjct 786544 GACACGATTGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAG 786485 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || | || || || || | |||||||||||| Sbjct 786484 CAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGATTACAAC 786425 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 || || |||||||| ||| |||| Sbjct 786424 ATCCAGAAGGAGTCTACCCTACA 786402 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| |||||| | || || || || || || | || Sbjct 785640 CATGCAGATCTTCGTCAAAACATTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCTTC 785581 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || ||||||||||| || || || || || ||||| Sbjct 785580 TGACACCATCGACAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATCCCTCCGGATCA 785521 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || || |||| ||| || ||| |||| |||||||| Sbjct 785520 GCAACGTCTCATCTTTGCGGGGAAGCAGCTGGAGGACGGTAGGACGCTTTCGGATTACAA 785461 Query 27167 CATTCAAAAGGAGTCGACCTTACAT-TTGGT 27196 ||| || |||||||| ||| | ||| ||||| Sbjct 785460 CATCCAGAAGGAGTCTACCCTTCATCTTGGT 785430 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || ||||| || | || Sbjct 786095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCTTCT 786036 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || || || || || ||||| Sbjct 786035 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAG 785976 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || || | ||||| | ||| | ||||| |||||| Sbjct 785975 CAACGCCTTATCTTCGCTGGGAAGCAGCTCGAAGATGGCCGGACGTTGTCCGACTACAAC 785916 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| | || | || |||| |||||||| Sbjct 785915 ATCCAGAAGGAGTCGACGCTTCATCTCGTCCTCCGGCTGCGCGGTGGCAT 785866 >seq199 Length=104010 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| ||||||| ||||| || || | ||| Sbjct 100405 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAGACTATTACCCTTGAGGTCGAGTCTTCC 100464 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| |||||||| || || || ||| Sbjct 100465 GACACAATCGACAACGTTAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAA 100524 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 |||||||| || | ||| ||||| || | |||||| | ||| || | || || ||||| Sbjct 100525 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAAGAC-GGGCGAACGCTCTCTGACTACAA 100583 Query 27167 CATTCAAAAGGAG 27179 |||||| |||||| Sbjct 100584 CATTCAGAAGGAG 100596 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || |||||||| | Sbjct 99845 CGGCATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTC 99904 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | || || || || || ||||| || || || ||||| || Sbjct 99905 ATCGGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGA 99964 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| ||||| | || | ||| ||||| || | || ||| | ||| | |||||||| Sbjct 99965 TCAGCAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTA 100024 Query 27164 CAACATTCAAAAGGAG 27179 |||||| || || ||| Sbjct 100025 CAACATCCAGAAAGAG 100040 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | ||||| || || || ||| | || Sbjct 100125 CATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTGGAGGTCGAATCCTC 100184 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || ||||||||||| || || || || || || || Sbjct 100185 TGATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGTATCCCGCCTGACCA 100244 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | || ||||| ||| | || ||| | || ||||||| || || Sbjct 100245 GCAACGCCTGATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACGCTTTCCGACTATAA 100304 Query 27167 CATTCAAAAGGAG 27179 ||| || |||||| Sbjct 100305 CATCCAGAAGGAG 100317 >seq57 Length=802683 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || |||||||| || ||| ||||||| ||||| || || | ||| Sbjct 362915 ATGCAAATCTTCGTCAAGACTCTGACAGGAAAGACTATTACCCTTGAGGTCGAGTCTTCC 362974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| |||||||| || || || ||| Sbjct 362975 GACACAATCGACAACGTTAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAA 363034 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 |||||||| || | ||| || || || | |||||| | ||| || | ||||| ||||| Sbjct 363035 CAGCGTTTGATCTTCGCTGGTAAGCAGCTAGAAGAC-GGGCGAACGCTCTCCGACTACAA 363093 Query 27167 CATTCAAAAGGAG 27179 ||| || |||||| Sbjct 363094 CATCCAGAAGGAG 363106 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || |||||||| | Sbjct 362353 CGGCATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTC 362412 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | || || ||| || || ||||| || || || ||||| || Sbjct 362413 TTCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGA 362472 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| ||||| | || | ||| ||||| || | || ||| | ||| | |||||||| Sbjct 362473 TCAGCAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTA 362532 Query 27164 CAACATTCAAAAGGAG 27179 |||||| || || ||| Sbjct 362533 CAACATCCAGAAAGAG 362548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | ||||| ||||| || ||| | || Sbjct 362633 CATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATTACCCTTGAGGTCGAATCATC 362692 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || ||||||||||| || || || || || || || Sbjct 362693 TGATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGTATCCCGCCTGACCA 362752 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | || ||||| ||| | || ||| | || ||||||| || || Sbjct 362753 GCAACGCCTGATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACGCTTTCCGACTATAA 362812 Query 27167 CATTCAAAAGGAGTCGACCTT 27187 ||| || |||||| ||||| Sbjct 362813 CATCCAGAAGGAGAGCACCTT 362833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917171355520