Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq199 95.1 1e-14 seq57 93.3 4e-14 >seq1 Length=2270075 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 ||||| || ||| || || || || ||||||| || || || | || || ||||| Sbjct 786402 TGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCCTCGAGCTGC 786461 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||||||||| || | |||||||| |||| ||| | | ||| |||||| ||| ||| Sbjct 786462 TTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 786521 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | ||| ||| |||||| || || | |||||| | || ||||| Sbjct 786522 GCCTTCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTCTTGCCCGTG 786581 Query 39262 AGCGTTTTAACAAAGATTTGCATC 39285 || || || |||||||| |||||| Sbjct 786582 AGTGTCTTGACAAAGATCTGCATC 786605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | ||||| ||| | ||| ||| || || ||||| ||||| Sbjct 785637 CATGCCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATC 785696 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || |||| |||||||| || || || || || |||||||||||||| | Sbjct 785697 CGAGAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGG 785756 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||| | ||| | | || |||| | | | ||| || |||| Sbjct 785757 AGGGATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACT 785815 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||| || | || || || || || || |||||||| ||||| Sbjct 785816 CGACCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 >seq199 Length=104010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 39076 ACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||||||||| || || || || || || | || ||||| |||| || Sbjct 100614 ACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTC 100555 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | |||||| ||||| | || | || || |||||| Sbjct 100554 GAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTG 100495 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| | | | ||| | | | || ||| ||||| || || | || ||| | | Sbjct 100494 GATCTTC-GCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || || || ||||||||||| Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133 |||||| || ||||||||||| || || || ||||| |||| ||| || || |||| | Sbjct 100336 CACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCT 100277 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 | || || ||||| ||||| || || || |||||||| | || | | ||| ||||| Sbjct 100276 CGAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTT 100217 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || ||| |||| ||| | | | ||||| || || || |||| || || | Sbjct 100216 GAATCTTCGCCTTGA-CGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTC 100158 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| || || || || ||||| Sbjct 100157 TTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 100126 >seq57 Length=802683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||||||||| || || || || || |||| || ||||| |||| || ||||| Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || | |||||| ||||| | || | || || |||||| ||| || Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 362999 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | | | | ||| | | | || ||| ||||| || || | || ||| | ||||| | Sbjct 362998 C-GCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTG 362940 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || ||||||||||| Sbjct 362939 TCAGAGTCTTGACGAAGATTTGCAT 362915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544416870338