Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq57 104 2e-17 seq199 100 2e-16 seq1 100 2e-16 >seq57 Length=802683 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| |||||||| || || || Sbjct 362357 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTCTTCG 362416 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| || ||| | || || ||||| Sbjct 362417 GACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGTATTCCACCGGATCA 362475 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || |||| ||| || | ||||||||| Sbjct 362476 GCAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTACAA 362535 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || |||||| |||| Sbjct 362536 CATCCAGAAAGAGAGCACA 362554 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | ||||| || |||||||||||||| || || || | Sbjct 363192 AATGCAGATTTTCGTGAAGACTTTGACGGGCAAGACGATCACTCTCGAGGTCGAGTCGTC 363251 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || ||| || || ||||| | ||||| || | Sbjct 363252 TGACACCATCGACAATGTCAAGGC-GAAGATTCAGGATAAGGAAGGCATTCCGCCTGACC 363310 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| || || || || ||||| || |||||||||| || ||| | || || | Sbjct 363311 AGCAGCGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACTCTCTCGGACTATA 363370 Query 23789 ACATACAAAAAGAG 23802 |||| || || ||| Sbjct 363371 ACATTCAGAAGGAG 363384 >seq199 Length=104010 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| |||||||| || || || Sbjct 99849 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACGCTCGAAGTGGAGTCATCG 99908 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || || ||||| Sbjct 99909 GACACCATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATTCCACCGGATCA 99967 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || |||| ||| || | ||||||||| Sbjct 99968 GCAGCGCCTTATCTTCGCTGGCAAGCAGCTAGAGGACGGACGGACGCTCTCCGATTACAA 100027 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || |||||| |||| Sbjct 100028 CATCCAGAAAGAGAGCACA 100046 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | ||||| || ||||||||||||||||| || || | Sbjct 100682 AATGCAGATTTTCGTGAAGACTTTGACGGGCAAGACGATCACTCTCGAAGTCGAGTCGTC 100741 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | ||||| || || Sbjct 100742 TGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATTCCGCCTGACCA 100801 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||||| | || || || ||||| || |||||||| Sbjct 100802 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAAGA 100837 >seq1 Length=2270075 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| ||||||||||| || |||||||| |||||||| || || | Sbjct 786096 AATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCTTC 786037 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || ||| ||||| || ||| | || || ||||| Sbjct 786036 TGACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCA 785977 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || || || || || || || ||||| | || || || ||| ||||| Sbjct 785976 GCAACGCCTTATCTTCGCTGGGAAGCAGCTCGAAGATGGCCGGACGTTGTCCGACTACAA 785917 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 785916 CATCCAGAAGGAGTCGAC 785899 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || |||||||| || || ||||| ||||| || || || | Sbjct 786604 ATGCAGATCTTTGTCAAGACACTCACGGGCAAGACAATCACGCTCGAGGTCGAGTCGTCC 786545 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || ||| | || || ||||| Sbjct 786544 GACACGATTGATAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGTATTCCCCCCGATCA 786486 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| ||||| || || || || | || || | ||||||||| Sbjct 786485 GCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGATTACAA 786426 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || || ||||| || |||| Sbjct 786425 CATCCAGAAGGAGTCTACCCTACA 786402 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||||||||| || |||||||| || || || | | Sbjct 786376 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACTATCACTCTGGAGGTCGAGAGCTCT 786317 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || ||| || || || || | || || ||||| Sbjct 786316 GACACAATCGACAATGTTAAGGC-TAAGATTCAGGATAAGGAGGGCATCCCTCCGGATCA 786258 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||||||| || || | || ||||| Sbjct 786257 GCAGCGCCTGATTTTTGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTGTCTGACTACAA 786198 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 786197 CATCCAGAAGGAGTCCAC 786180 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || |||||||| ||||| || || || | Sbjct 785639 ATGCAGATCTTCGTCAAAACATTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCTTCT 785580 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || ||| | || || ||||| Sbjct 785579 GACACCATCGACAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATCCCTCCGGATCAG 785520 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACA 23788 || ||| | || ||||| || || || ||||| |||| | || ||| || |||||| Sbjct 785519 CAACGTCTCATCTTTGCGGGGAAGCAGCTGGAGGACGGTAGGACGCTTTCGG--ATTACA 785462 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 785461 ACATCCAGAAGGAGTCTAC 785443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008668994808