Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq199 152 1e-31 seq57 150 4e-31 >seq1 Length=2270075 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || || || || |||| ||||| |||| ||| || | |||||| Sbjct 785884 AGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCT 785943 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||||||||||||||| ||||| || || || |||||||| |||||||| Sbjct 785944 TCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTCC 786003 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| || | || || || | |||||||||| Sbjct 786004 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTC 786063 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| | || || | ||| | |||||| Sbjct 786064 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATT 786096 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| || || || || || || |||| |||||||| | | || || || || || | Sbjct 785432 CAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCA 785491 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||||||| || ||||| || ||||| || || || || ||||| ||||||||||| | Sbjct 785492 GCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAA 785551 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| ||||||||||| || | || || || | ||||||||||||| Sbjct 785552 TCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGC 785611 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| ||||| | ||| | ||||| Sbjct 785612 CAGTCAATGTTTTGACGAAGATCTGCAT 785639 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| |||||||||| || || | ||||| Sbjct 786393 AGTACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCC 786452 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | || || || ||||| |||||||| |||||||| Sbjct 786453 TCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCC 786512 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || ||||| || | || || || | |||||| ||| Sbjct 786513 TGGATCTTCGCCTTCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTC 786572 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 786573 TTGCCCGT 786580 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || || | || || || || |||| ||||||||| | | || Sbjct 785647 CGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTA 785706 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||||||||||||||| || || || ||||| || || || || Sbjct 785707 CGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCC 785766 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| |||||| ||| ||| ||||| ||||| || | || || || ||| Sbjct 785767 TCCTTGTCTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAAC 785826 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || || | ||| || Sbjct 785827 GTAATGGTCTTCCCGGTGAGAGTCTT 785852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| ||||| ||||||||||| || |||| |||||||| | | || Sbjct 786612 CGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCCGATAGTGTA 786671 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 | ||||| || ||||| || |||||||| || || ||||| |||||||| ||||| Sbjct 786672 CGGCCATCCTCCAGCTGTTTGCCAGCGAAAATCAGGCGTTGCTGGTCGGGAGGAAT 786727 >seq199 Length=104010 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||||||||| || || || | || || || | | || Sbjct 100903 CGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTA 100844 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 100843 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCT 100784 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||||||||||| || | || || || | Sbjct 100783 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGA 100724 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||||||||||||||| || | ||| | |||||| Sbjct 100723 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| ||||| |||| |||||||||| | || | || || |||| Sbjct 100056 CAAGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTA 99997 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| |||||||||||||| || || || || || |||||||| |||||||| |||| Sbjct 99996 GCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGA 99937 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||||||| ||||||||||| || | ||||| || | |||||| ||||||| Sbjct 99936 TCTTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGC 99877 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | ||||| Sbjct 99876 CAGTAAGGGTCTTGACGAAGATCTGCAT 99849 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| || || |||| || || |||| | || | || || || | Sbjct 100333 CAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGA 100274 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 | ||||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||||||||| | Sbjct 100273 GTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAA 100214 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || |||||||| || |||| ||| || || | || || ||||||| Sbjct 100213 TCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTTGC 100154 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| | || || | ||| | ||||| Sbjct 100153 CCGTGAGCGTCTTGACGAAAATCTGCAT 100126 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| || || ||| || || || | ||||| || | | |||| ||| ||||| | Sbjct 100612 CAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGA 100553 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| | || |||||||| || || || ||||||||||| |||| Sbjct 100552 GCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 100493 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||| ||||| || | || || || | || || ||||| | Sbjct 100492 TCTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTC 100433 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| || || | ||| | |||||| Sbjct 100432 CTGTCAGGGTCTTGACGAAGATTTGCAT 100405 >seq57 Length=802683 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| || ||| ||||| |||| |||||||||| | || | || || |||||| Sbjct 362562 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 362503 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| |||||||||||||| || || || || || |||||||| |||||||| |||||| Sbjct 362502 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 362443 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 ||| ||||||| ||||||||||| || | ||||| || | |||||| |||||||| Sbjct 362442 TTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCA 362383 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 362382 GTAAGGGTCTTGACGAAGATCTGCAT 362357 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||||||||| || || || | || || || | | ||| Sbjct 363413 CGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTA 363354 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| ||||||||||| | || || ||||| |||||||| ||| Sbjct 363353 CGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCT 363294 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || || ||||| ||| ||| ||||||||||| || | || || || | Sbjct 363293 TCCTTATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGA 363234 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||||||||||||||| || | ||| | |||||| Sbjct 363233 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || || |||| ||||| |||| | |||| ||| |||||||||||||| ||||||||| Sbjct 363105 TCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTGCTTACCAGCGAAG 363046 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | || |||||||| || || || ||||||||||| |||||||| ||| || Sbjct 363045 ATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACGTTG 362986 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 ||||| ||||| || | || || || | || || ||||| || |||| ||| || | | Sbjct 362985 TCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTCAGAGTCTTGACG 362926 Query 225703 AACACTTGCAT 225713 || | |||||| Sbjct 362925 AAGATTTGCAT 362915 Score = 102 bits (112), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| || ||| || || |||| || || |||| | || | || || || || Sbjct 362838 AGGTGAAG-GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGT 362780 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||||||||| ||| Sbjct 362779 TGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAATC 362720 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || |||||||| || || | ||| || || | || || ||||||||| Sbjct 362719 TTCGCCTTGACGTTGTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCC 362660 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 362659 GTGAGCGTCTTGACGAAAATCTGCAT 362634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527746876844