Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq199 114 3e-20 seq57 114 3e-20 >seq1 Length=2270075 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| || ||||| || ||||||||||| |||| || || | ||||| Sbjct 785883 GAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATC 785942 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||||| ||||||||||| | ||||| |||| | || || ||||| || Sbjct 785943 TTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTC 786002 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | |||| ||| ||| ||||| || || || || Sbjct 786003 CTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGT 786062 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||||||| ||||| ||||||| ||||||| Sbjct 786063 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATT 786096 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | || ||||| || ||||| |||||||| | | || | || || Sbjct 785656 AGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCGTCC 785715 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| |||||||| || | ||||||||| | | ||| || ||||| ||| Sbjct 785716 TCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 785775 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| |||||| | || | |||| || ||| || || | ||||| || Sbjct 785776 TGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAACGTAATGGTC 785835 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||||||||| |||| |||||| Sbjct 785836 TTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||||||||| |||||||| || |||||||||||||| | | || || || || || | Sbjct 785432 CAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCTCCA 785491 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| || ||||| || | ||||| |||| | ||| || ||||| ||||||| Sbjct 785492 GCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAA 785551 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | |||| ||| ||| || || || || || || |||| Sbjct 785552 TCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGC 785611 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || ||||||| |||||| Sbjct 785612 CAGTCAATGTTTTGACGAAGATCTGCAT 785639 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || ||||| || ||||| || ||||||||||| || | | || | || ||||| | Sbjct 786171 AGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAAC 786230 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || || || || || | |||||| |||| | ||| || ||||| || ||||| Sbjct 786231 TGCTTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTGAATC 786290 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || ||| | || | |||| || ||||| || || ||||| ||||| || ||| Sbjct 786291 TTAGCCTTAACATTGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCC 786350 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || |||| |||||| Sbjct 786351 GTGAGAGTCTTGACAAAGATCTGCAT 786376 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || |||||||||||||||| | || | ||||| Sbjct 786393 AGTACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGCGTACGACCATCC 786452 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | |||||| || | | || || ||||| || Sbjct 786453 TCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCC 786512 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | |||| || ||| || || || || || || Sbjct 786513 TGGATCTTCGCCTTCACATTATCAATCGTGTCGGACGACTCGACCTCGAGCGTGATTGTC 786572 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || |||| |||||| Sbjct 786573 TTGCCCGTGAGTGTCTTGACAAAGATCTGCAT 786604 >seq199 Length=104010 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || |||||| ||| || || ||||| || || | | || | |||||| Sbjct 100894 AGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACCATCT 100835 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || || |||||||| ||| Sbjct 100834 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCT 100775 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| || ||| ||||| ||||| || || Sbjct 100774 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGATCGTC 100715 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| | |||||||||||| | ||||||| Sbjct 100714 TTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||| |||||||||||||||| | || | || || |||| Sbjct 100056 CAAGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTA 99997 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||||||||| | |||||| |||| | || || ||||| || || | Sbjct 99996 GCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGA 99937 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | |||| || ||| ||||| || || || || |||| Sbjct 99936 TCTTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGC 99877 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| |||||| Sbjct 99876 CAGTAAGGGTCTTGACGAAGATCTGCAT 99849 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| || |||||||| || |||| | || | || || || | Sbjct 100333 CAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGA 100274 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | |||||||| | || ||| || ||||| ||||||| Sbjct 100273 GTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAA 100214 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | | || || || || || || ||||| || |||| Sbjct 100213 TCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTTGC 100154 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| ||||| | |||||| Sbjct 100153 CCGTGAGCGTCTTGACGAAAATCTGCAT 100126 >seq57 Length=802683 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || ||||| || |||||| |||||||||||||||| | || | || || ||||| Sbjct 362562 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 362503 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || ||||||||||| | |||||| |||| | || || ||||| || || || Sbjct 362502 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 362443 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| || ||| | || | | |||| ||| ||| ||||| || || || || ||||| Sbjct 362442 TTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCA 362383 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||||| |||||| Sbjct 362382 GTAAGGGTCTTGACGAAGATCTGCAT 362357 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||| || || ||| || ||||||||||| |||| | |||| ||| |||||||| Sbjct 363120 AGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGC 363061 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || |||||||| | | ||| ||||||| | ||| |||||||| || || || Sbjct 363060 TGCTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATC 363001 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || || | || | |||| ||| ||| || ||||| |||||||| || || Sbjct 363000 TTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCT 362941 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||||| ||||| Sbjct 362940 GTCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || |||||| ||| || || ||||| || || | | ||| | || ||| Sbjct 363404 AGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCT 363345 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | | ||||||||| | || || |||||||| || Sbjct 363344 TCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCC 363285 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | |||| || ||| || || ||||| || || Sbjct 363284 TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTC 363225 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| | |||||||||||| | ||||||| Sbjct 363224 TTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || |||||||| || |||| | || | || || || || || || || || Sbjct 362825 CTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 362766 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | |||||||| | || ||| || ||||| |||||||| || ||||| | Sbjct 362765 GATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 362706 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | | || || || || ||||| ||||| || ||||||||||| ||||| || Sbjct 362705 GTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCCGTGAGCGTCTTGAC 362646 Query 152093 GAAGACCTGCAT 152104 ||| | |||||| Sbjct 362645 GAAAATCTGCAT 362634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817458967646