Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq199 163 3e-35 seq57 163 3e-35 seq1 138 1e-27 seq146 118 1e-21 seq145 93.3 4e-14 >seq199 Length=104010 Score = 163 bits (180), Expect = 3e-35 Identities = 162/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||||||||||||||||||||||||||| ||||| ||||| || ||| |||| |||||| Sbjct 100610 AGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTCGAGC 100551 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| ||||| |||| ||||||||||||| || | || ||||||||| || | Sbjct 100550 TGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-TGGAT 100492 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | |||| | | | |||||| ||||| ||||| | || || || || || Sbjct 100491 CTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCC 100432 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| ||||| || ||||| Sbjct 100431 TGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||||||||||||||||| || Sbjct 100910 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 100851 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 100850 GAGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 100791 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||| | || | || || | ||| | | | ||||| |||||| | Sbjct 100790 AATGCCTTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGA 100732 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || ||||| || ||||||| ||||| |||||||||||||| Sbjct 100731 CTTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 Score = 143 bits (158), Expect = 2e-29 Identities = 162/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || ||||||||||||||||| |||||||||||||| || ||||| |||| | Sbjct 100336 CACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCT 100277 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 |||| |||||||| || || |||||||| || ||||| | || | | |||||||| | Sbjct 100276 CGAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CT 100218 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | || || || || ||||||| || || || Sbjct 100217 TGAATCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTC 100158 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| |||||||| ||||||||||||||| Sbjct 100157 TTGCCCGTGAGCGTCTTGACGAAAATCTGCATG 100125 Score = 129 bits (142), Expect = 5e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || |||||||| ||||| ||||| || |||||||| || || |||| || ||| Sbjct 100054 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 99995 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| ||||| || |||||||| || |||| |||| | |||||||||| ||| Sbjct 99994 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 99935 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || |||| || | | | ||||| |||||||| || | ||| || || || || Sbjct 99934 TTGGCCTTC-ACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCC 99876 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| ||||| ||||||||| Sbjct 99875 AGTAAGGGTCTTGACGAAGATCTGCATG 99848 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || |||||||||||||| ||||| ||||| || || |||||| | || |||||| Sbjct 99770 AGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGC 99711 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||||||||| || ||||| || ||||| Sbjct 99710 TGCTTGCCGGCGAAGATGAGGCGTTGCTGGTC 99679 >seq57 Length=802683 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||||||||||||||||| || Sbjct 363420 GCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGA 363361 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| || ||||||||||| ||||| |||| |||||| ||||| | || Sbjct 363360 GAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGG 363301 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||| ||| ||| | || || | || | | | ||||| |||||| | Sbjct 363300 AATGCCTTCCTTATCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGA 363242 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || ||||||| ||||| |||||||||||||| Sbjct 363241 CCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 Score = 154 bits (170), Expect = 1e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||||||||||||||||||||| ||||| ||||||||||| || ||| |||| || ||| Sbjct 363120 AGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGC 363061 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || ||||| |||| ||||||||||||| || | || ||||||||| || | Sbjct 363060 TGCTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-TGGAT 363002 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | |||| | | | |||||| ||||| ||||| | || || || || || Sbjct 363001 CTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCC 362942 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| ||||| || ||||| Sbjct 362941 TGTCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 134 bits (148), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || |||||||| ||||| ||||| || |||||||| || || |||| || ||| Sbjct 362562 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 362503 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| ||||| || |||||||| || |||| |||| | |||||||||| ||| Sbjct 362502 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 362443 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||| |||| || | | | ||||| |||||||| || | ||| || || || || Sbjct 362442 TTTGCCTTC-ACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCC 362384 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| ||||| ||||||||| Sbjct 362383 AGTAAGGGTCTTGACGAAGATCTGCATG 362356 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 |||||||||||||| |||||||||||||| || ||||| |||| ||||| |||||||| Sbjct 362830 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 362771 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||||||| || ||||| | || | | |||||||| | ||| | || || | Sbjct 362770 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTCGCCTT 362712 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | || || || || ||||| | || || || || ||||| ||||| Sbjct 362711 GACGTTGTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCCGTGAGCGT 362652 Query 41845 CTTTACGAAAATCTGCATG 41863 ||| ||||||||||||||| Sbjct 362651 CTTGACGAAAATCTGCATG 362633 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || |||||||||||||| ||||| ||||| || || |||||| | || |||||| Sbjct 362278 AGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGC 362219 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||||||||| || ||||| || ||||| Sbjct 362218 TGCTTGCCGGCGAAGATGAGGCGTTGCTGGTC 362187 >seq1 Length=2270075 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||||||||| ||| ||||||||| || || || || || Sbjct 785640 GCCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGA 785699 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 785700 GAGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 785759 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| | ||| | ||||| | || | | | ||||| ||||| | Sbjct 785760 GATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGA 785818 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| || || || || || || ||||| || || ||||||||| Sbjct 785819 CCTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCATG 785868 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | || ||||| ||||| ||||||||| ||||| |||||||| Sbjct 785868 GCCACCGCGCAGCCGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 785927 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || ||||||||||| || ||||| || ||||| || || |||| || Sbjct 785928 CAACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGG 785987 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || || | ||| | | | ||||| ||||| | Sbjct 785988 AATACCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGA 786046 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 786047 CTTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 786095 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || || || || || ||||||||| ||||| || ||||| Sbjct 786378 CCGCCACGCAGGCGAAGTACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 786437 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| || || |||| |||||| || || | |||| Sbjct 786438 AGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGA 786497 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | | | |||||| |||||| || Sbjct 786498 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCA-ATCGTGTCGGACGACTCGAC 786556 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || ||||| || ||||| || || |||||||| Sbjct 786557 CTCGAGCGTGATTGTCTTGCCCGTGAGTGTCTTGACAAAGATCTGCAT 786604 Score = 111 bits (122), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || |||||| ||||||||| ||||| ||||| || || || || |||| || | | Sbjct 786171 AGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAAC 786230 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || ||||||||||| || |||| || | || |||||| ||| ||| | Sbjct 786231 TGCTTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCC-TGAAT 786289 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || | ||| | | | ||||| ||| ||| ||||||| || || || || Sbjct 786290 CTTAGCCTTAACATTGTCGATTGTGTCAGAGCT---CTCGACCTCCAGAGTGATAGTCTT 786346 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || |||||||| Sbjct 786347 TCCCGTGAGAGTCTTGACAAAGATCTGCAT 786376 >seq146 Length=609471 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||||||||| |||||| | Sbjct 163652 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTG 163711 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 163712 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 163771 Query 41756 ACGCT 41760 | ||| Sbjct 163772 ATGCT 163776 >seq145 Length=652196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||||||||| ||||| || |||| ||||||||| |||| || Sbjct 199042 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCA 198983 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||||| ||||| || |||||||| ||||| | ||| Sbjct 198982 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGGGG 198942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302693991200