Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 >seq1 Length=925270 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 230435 TTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAG 230494 |||| || |||| || ||||||||||| || ||| | ||||||||||||||||| | Sbjct 580893 TTCCTTGCGGCCTCATCGGCATGAACGCGACGCTCATGTGCCAGTACATCGAATTCGTCG 580952 Query 230495 CCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTG 230554 | ||||| | |||| || || || | ||| ||||||||| | ||||||||| | Sbjct 580953 CTGACCGGCTCCTTGTCGCGCTCGGCGGCTCGAAGGTGTACAACGTGACGAACCCCTTCG 581012 Query 230555 CATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTG 230614 || ||||| | || ||||| || || ||||||||||||||||| ||||| || || Sbjct 581013 ACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTATCTG 581072 Query 230615 ACTATCAGAGGCCTGGTGT 230633 ||||| || | | ||||| Sbjct 581073 ACTATGGGAAGGCGGGTGT 581091 Score = 116 bits (128), Expect = 8e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||||| | || ||| | ||||||||||||||||| |||||| | | Sbjct 578161 CTGATTGGCATGAACGCGCAGCTCATGCGCCAGTACATCGAATTCGTCGCCGACAGGCTG 578102 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||| | || || |||||||| ||| || | | ||| || || | || ||||| Sbjct 578101 CTGGTTTCGCTGGGCAACGAGAAACACTACCACGCAACGAATCCGTTCGATTTCATGGAC 578042 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||| || || ||||||||||||||||| |||||||| Sbjct 578041 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 577998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057794480760140