Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 >seq1 Length=925270 Score = 140 bits (154), Expect = 3e-28 Identities = 290/429 (68%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 |||||||| || || | ||||||||| | | | || | ||||| || ||||||| Sbjct 578326 CATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAATCAACTCGTTTGAGAATGTCAGT 578385 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 |||||||| || |||||||| | ||| ||||| ||||||||||| || || || || Sbjct 578386 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAAAAAG 578445 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTTGTTACG 17142 || ||||| |||| || || || | | ||| || ||| | ||| | ||| | || Sbjct 578446 ATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTCTGCG 578505 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 ||||| | |||| || || || | ||| ||||| || | || ||||| | Sbjct 578506 -ATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGGCGTC 578564 Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 ||||| || ||| || |||| | || || |||||||| || || ||| | Sbjct 578565 AAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGTATGT 578624 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 |||||| |||||||||||||| || || || ||||| || || || |||||||| Sbjct 578625 TTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCGCAGC 578684 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || || |||| || || | || || |||||||| ||||| ||| || || Sbjct 578685 CTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATCGGATGCAGC 578744 Query 17383 GAAAAACGC 17391 ||| || || Sbjct 578745 GAAGAAGGC 578753 Score = 140 bits (154), Expect = 3e-28 Identities = 290/429 (68%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||| ||| || | |||||||| | |||||| || |||||||| || || | Sbjct 580738 CAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTGAGG 580679 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || || ||||| | ||| || |||| || || || ||||| ||||| Sbjct 580678 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGACGCAAAGGAGCCAGAGAAGAAG 580619 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTTGTTACG 17142 ||||||||||||| || || |||| | || |||||| | ||| | || | || Sbjct 580618 ATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTCTGCG 580559 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 ||||| | |||| || || || | || |||||| || || || ||||| | Sbjct 580558 -ATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCATC 580500 Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | | ||| | || |||| | || || || |||||||| || ||| | Sbjct 580499 GAAGAGGTGCTCGCGCTGCTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATACGT 580440 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 |||||||| ||||||||||| ||||| || ||||| |||||||| || || || Sbjct 580439 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGCAGC 580380 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || || | |||| ||||| | || |||||||| || || ||||| || || Sbjct 580379 CTGCACCTCGTTGGAGAAACGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAGGCAGC 580320 Query 17383 GAAAAACGC 17391 |||||| || Sbjct 580319 GAAAAAGGC 580311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531509821040