Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1362 116 4e-21 >seq1362 Length=45920 Score = 116 bits (128), Expect = 4e-21 Identities = 209/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTC-TTGATCTCCCC 145982 || || ||||| ||| |||||| || | | | || ||| || || || |||| | Sbjct 43253 GCAGGATTCCACGCGCTGAGGATGATGCGGC-GATCAGTGGGGTCTTCCTTAATCTTTCG 43311 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTA 146042 ||| ||| ||||||||| || ||||| || |||||| | | | ||||| ||| Sbjct 43312 TATGCACTCCGCGAGCTGGTCGACACCCTGGCCAGTGTAATCCGCGTCGCAGTCCGTGTA 43371 Query 146043 CGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCT 146102 | || || || |||||||||||||| || || || |||||||||||||| | ||| Sbjct 43372 CTTCGCGCCAAAATGCCTCCACTGGAAGCCATACACCGGCCCCAGGTCCCCTTCCCTCCT 43431 Query 146103 GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGAC 146162 ||| || ||||| | | || || ||| | |||||| | ||||||||||||| Sbjct 43432 GTGGCCAAGCCCCCGCTTCTCCAGAAACTCCTTGCTCCCGTTCCCATCCCAGATCTTGAT 43491 Query 146163 GCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 |||| |||| || | || || |||||||| || |||||||| || ||||| || Sbjct 43492 GCCCTTCGCCGACAAAAGCTTCGAATCCGTGGAACCGTGAATGAACCACAGGAGCTCCTC 43551 Query 146223 GAG 146225 || Sbjct 43552 CAG 43554 Score = 111 bits (122), Expect = 2e-19 Identities = 215/316 (68%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||| | ||| | | ||| || | |||||||||| | | |||||||||| | Sbjct 42787 CATCTTCATCGCGATCGGTGGGTGCGGCTCATAGCCCTCCACGACCACGTCCTCCGCCTT 42846 Query 145605 GAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCT 145664 ||||||||| | |||| |||| || | || || ||| | || || ||||| ||||| Sbjct 42847 GAAGTCATCGACGTCCCACACCTCCCGCGCGAACCGCAGCTTCGGGAATGGCCGCGGGCT 42906 Query 145665 CCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 145724 | | ||||| || || | || ||||||| |||| || |||||||| || || Sbjct 42907 GCGCTTGAGCTGCTCCTCGAGTGCGTCGACGTGGTCCCGGTACACATGCGCGTCGCCGAG 42966 Query 145725 GACGTGGATGAAGTCCCCG---GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAG 145781 ||||||| | | || |||||| ||||| || ||||| | || || || Sbjct 42967 C---TGGATGATGAGCTCGTGCGGCTCGGTCTGTGTGAGATGCGCGACGAGGTGCGTGAG 43023 Query 145782 CAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTA 145841 ||| | |||| || ||||||||||| | || || || | || | |||||||| || Sbjct 43024 CAGTGCGTAGGACGCGATGTTGAAGGGGATGCCGAGACCGAGATCTGCGGAGCGCTGATA 43083 Query 145842 CAGCTGGCAGGAGAGC 145857 || |||| |||||| Sbjct 43084 GAGGAGGCACGAGAGC 43099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590060735159120