Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq117 140 4e-28 seq1836 120 3e-22 >seq117 Length=384797 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| |||||||||||| ||||| ||||| |||| ||| |||||| |||| || |||||| Sbjct 361761 TGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGC 361820 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || |||||||| ||||| ||||||||||| | || | | |||||||||| ||| || Sbjct 361821 TTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTC 361880 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | ||||| || ||||| |||| ||||| || || || || Sbjct 361881 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 361939 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 | |||||| || ||||| ||||| Sbjct 361940 CAACGTCTTGACGAAGATCTGCAT 361963 Score = 120 bits (132), Expect = 3e-22 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || || ||||| | ||||| || | Sbjct 361470 ACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCC 361529 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| |||||||| || || ||||||||||| | ||| | || |||||| Sbjct 361530 GTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 361589 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | ||||| ||| || || |||| ||| Sbjct 361590 GTCC-TGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTG 361647 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || || | |||||| || ||||| |||||| Sbjct 361648 ATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCATT 361686 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || ||||| | || || |||||||||||| Sbjct 362327 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAAGCTGCTTACCA 362386 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| |||||||| || | || | | |||||| ||| ||| || || Sbjct 362387 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTT 362446 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | ||||| || ||||| |||| ||| ||||| || || || || || Sbjct 362447 A-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAGTGAGGGT 362505 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| |||||||| ||||| Sbjct 362506 CTTGACAAAGATCTGCAT 362523 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| |||| ||||| ||| | || || |||||||| || Sbjct 362611 GTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCATCCTCGAGCTGCTTGCCG 362670 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| ||||| ||||||||||| | ||| Sbjct 362671 GCGAAGATGAGGCGCTGCTGGTCAGGCGG 362699 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||||||||||| || || ||||| || | || || || | || || Sbjct 362036 ACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 362095 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || || || |||||||| | || | | |||||||| | | Sbjct 362096 GAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGT-CTT 362154 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | |||| |||| | | | ||||| || || || || | || || || | Sbjct 362155 GAATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCT 362214 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| || ||||| ||||| Sbjct 362215 TGCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 >seq1836 Length=575610 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || |||| || | |||||| || || || Sbjct 191703 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGCTTGCCCGCAAA 191762 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| |||| || | || |||||||||| ||| || || | ||| Sbjct 191763 AATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 191821 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || ||||||| ||| || || |||| |||||| || |||||||| || ||||| | Sbjct 191822 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTGA 191881 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 191882 CGAAGATTTGCAT 191894 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||| || || | || || |||||||| || ||||| Sbjct 191931 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 191990 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||||| || | || |||||||||| ||| || || | ||| Sbjct 191991 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 192049 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| |||||| || |||||||| || ||||| | Sbjct 192050 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTAA 192109 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 192110 CGAAGATCTGCAT 192122 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| | || |||| |||| || | |||||| |||||||| Sbjct 190964 CTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAA 191023 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| |||||| |||| ||| Sbjct 191024 GATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCCTTGA-CGT 191082 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || || | ||||| || || || || | |||||| | Sbjct 191083 TGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGTCAACGTCTTCA 191142 Query 43171 CAAAGATTTGCAT 43183 |||| || ||||| Sbjct 191143 CAAAAATCTGCAT 191155 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| || | ||| ||||| |||| || | ||| || || ||||| Sbjct 191420 CTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAA 191479 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| |||| || | || |||||| ||| ||| ||| |||| ||| Sbjct 191480 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 191538 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || || | ||| ||||| || ||||| |||||||| | Sbjct 191539 TGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGA 191598 Query 43171 CAAAGATTTGCAT 43183 | || |||||||| Sbjct 191599 CGAATATTTGCAT 191611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571802032265840