Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1494 89.7 1e-12 >seq1494 Length=22227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 |||||||| || ||| || || || ||||| | ||||| ||| ||| || Sbjct 17737 TTCAAAACTCTTGAGCGGTCATACCTGCTCAAGCTCGATGGACGTGTCGGGGAGCGTCCC 17796 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-- 248950 ||||| ||| | ||||| || |||||||| || ||| || | ||| ||||| || Sbjct 17797 CAGCATATGCTCATGCGTGTTGCTGTCGGCATCCAC--GGCTCCGATATCGAGCGGGCAA 17854 Query 248951 TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 ||||||| |||| | ||| | || | | |||||||| | || ||| | |||| Sbjct 17855 TCGAGACTTACAACTTGATGTCTCTCCGTTACTTCACACATGCGTCGCCAACGTTGTTCA 17914 Query 249011 ACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||| ||||| | || | ||||||||||||||||| || | ||| | |||||| Sbjct 17915 ACGCTGGTACACCACATCCG-CAGCTGAGCTCGTGCTTCCTCGTCTGTATGAAGGACGAC 17973 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAA 249098 || |||| || || || |||||||| || Sbjct 17974 TCCATCGAGGGTATCTACGACACGCTCAA 18002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073736435877504