Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq117 129 5e-25 seq1836 105 5e-18 seq1666 102 6e-17 >seq117 Length=384797 Score = 129 bits (142), Expect = 5e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || |||||||||||||| |||||||||||| || |||| | || | Sbjct 362035 TACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCT 362094 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || || || |||| || || ||||| || || | |||||||||||| Sbjct 362095 CGAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTT 362154 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| ||| ||| || | | | |||| | ||| ||||| | |||||| |||| Sbjct 362155 GAATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCT 362214 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||||||||| ||||| ||||| Sbjct 362215 TGCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 120 bits (132), Expect = 2e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| ||||| |||||||||||||||||||||||||| ||| || |||| | Sbjct 361753 TACCAAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTT 361812 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || ||||| || | ||||| ||||| ||||| | |||||||||||| Sbjct 361813 CGAGCTGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCT 361872 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | ||||| | ||||||||| | ||| || |||| Sbjct 361873 GGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCT 361932 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || |||| ||||| || ||||| ||||| Sbjct 361933 TCCCGGTCAACGTCTTGACGAAGATCTGCAT 361963 Score = 118 bits (130), Expect = 8e-22 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || ||||||||||||||||| |||||||||||| ||| ||| | || | Sbjct 362313 TACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCT 362372 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || ||||| || | ||||| || || || || | ||||||||| ||| Sbjct 362373 CAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCT 362432 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | ||||| | ||||||||| | ||||| |||| Sbjct 362433 GGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCT 362492 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || || ||||| |||||||| |||||| Sbjct 362493 TCCCAGTGAGGGTCTTGACAAAGATCTGCATG 362524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||||||||||||||| ||||| || || || || |||| |||| || Sbjct 361482 GTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCCGTCCTCCAACTG 361541 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| ||| || Sbjct 361542 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTT 361601 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | || |||||||| || || Sbjct 361602 CGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTGATCGTCTTCCCGGT 361661 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 361662 CAACGTCTTGACGAAGATCTGCAT 361685 >seq1836 Length=575610 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||| ||| ||| ||| | || || || || Sbjct 191919 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTCGAGCTG 191978 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| ||||| ||||||||||| | |||||||||||| || || Sbjct 191979 CTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 192038 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | |||| ||| || || | || ||||||||||||| Sbjct 192039 CGCCTTCA-CGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCG 192097 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||| || ||||| ||||| Sbjct 192098 TGAGAGTCTTAACGAAGATCTGCAT 192122 >seq1666 Length=152845 Score = 102 bits (112), Expect = 6e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||||||||| | || |||| |||| ||| Sbjct 77728 ACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGAGTGCGACCGTCCTCC 77787 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| ||||| ||||||||||||||||| Sbjct 77788 AGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGAGG 77828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064712975738