Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 185 8e-42 seq1494 134 1e-26 seq1836 123 2e-23 seq117 114 1e-20 >seq1 Length=925270 Score = 185 bits (204), Expect = 8e-42 Identities = 386/567 (68%), Gaps = 21/567 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| ||||||||| | || || || || || ||||| | ||||| |||| ||| Sbjct 578882 ATATGGCGCATGTACAAGCAAGCGGAGGCCTCTTTCTGGACAGCAGAAGAGATAGATCTG 578823 Query 57630 TCTAAGGATCTGAGCGATTGGGAT--TC-CCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || | | || ||| | || |||||| || ||| || |||| || | Sbjct 578822 TCGCACGACCACTGGGACTGGAACCATCGCCTCAACGACGACGAGCGACATTTCATCTCA 578763 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| ||||||||||| || || |||||||| | || || | Sbjct 578762 CACGTCCTCGCCTTCTTCGCTGCATCCGATGGCATAGTGAACGAGAACCTCGTAGAGCGC 578703 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || ||||| | |||| || | || || ||||| || ||| | || Sbjct 578702 TTCTCGAACGAGGTGCAGGCTGCGGAAGCACGGTGTTTCTACGGCTTCCAAATCATGATG 578643 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AA 57862 || ||| | ||||| |||| || ||||| || |||||||| ||| | |||||| || Sbjct 578642 GAGAACATACATTCCGAAACATACTCGCTCCTAATCGATACATACATCAAGGACCCGCAA 578583 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 ||| || ||| || || |||| ||||| |||| || ||| |||||||| Sbjct 578582 GAACGCGAC-CGT---CTATTTGACGCCATCGAGGCAATACCATGCATCAAGAAGAAGGC 578527 Query 57923 AGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | || ||||| | ||||| | | | ||||| ||| | || Sbjct 578526 GGACTGGGCTCTCCGCTGGATCGCAGACAAGCG----GTCGAGTTTCGCTGAGCGACTGG 578471 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || ||||||||||| || || || || || || ||| || || || ||||| ||| Sbjct 578470 TGGCCTTCGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTCGCCGCCATATTCTGGC 578411 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGAT-ATCGCGCGAC 58097 | |||||||||||||| |||||||| ||||| || ||||||||||| ||| |||||| Sbjct 578410 TCAAGAAACGCGGCCTCATGCCCGGACTGACATTCTCAAACGAGTTGATTATC-CGCGAC 578352 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGC 58124 ||||| | || || || || || ||| Sbjct 578351 GAGGGAATGCACACGGACTTCGCATGC 578325 >seq1494 Length=22227 Score = 134 bits (148), Expect = 1e-26 Identities = 256/374 (68%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | || || || |||| |||||| ||||| || |||||||| Sbjct 19300 GTGTAAGGCTCGAAGCACTCGTTATTGCCCAAGATCTGACTCGTCGACGCCGTCGGCATA 19241 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGAC 22624 ||||| | || |||||||| || | || ||||| | || ||| ||| || | Sbjct 19240 GGCGCAACGAGCAGCGAGTTCCTGAGACCAGTCTTTGCCACCTTCTCCTTCAGCGACGCC 19181 Query 22625 CAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGA 22684 |||||||||| ||| | || || ||| |||||| ||| || |||| | ||| | Sbjct 19180 CAGTCCCACAAATCTGTGGGTGTGACA---CCCCACAGATCATACTGCAGCTGGCCTTGG 19124 Query 22685 CTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTC 22744 | | || ||||| |||||||| ||||| || |||| | || || | || | |||| Sbjct 19123 GACACAGGACTGCCCTCGTACGTCTCGTAAGGGCCATCAACGGCAGCGATGTCACTGCTC 19064 Query 22745 GCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGCGGC 22803 ||||| | |||| ||| ||||| ||||| || |||||||| | || ||| | | Sbjct 19063 GCCTCGACCGCGGCGTGGTATATGGTCTCCGCAATCTTCTTGTTTAGGTTACGCGCCTCC 19004 Query 22804 GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTAT 22863 | || ||| | ||||| || | || ||| ||||| || | |||||| || || || Sbjct 19003 GGCG-AGTCGAAGGGCATGCGAAGAGCCATGAAGGCGTCGGCGAGACCCTGCACACCGAT 18945 Query 22864 ACCGATCGGTCGGT 22877 |||||||| |||| Sbjct 18944 GCCGATCGGGCGGT 18931 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| || || ||||| || |||||||| || || ||||||||||| Sbjct 18356 AAGAGATCGGGGATCCAGAGTGCATAGAAGAGGTCGCGGGCACGGACTTCCTCTTTGCCA 18297 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | ||| | || || || || || ||||||| ||||||||||| | Sbjct 18296 TGATTCTTTCGGAGATCGAGGAACTCGAAGACATCGTCATGCCAGGGCTCGAGGTAGATA 18237 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| |||| ||| || || || || || ||||| ||||| || || || Sbjct 18236 GCGAAAGCGCCGGGTCGCTTGTTACCACCTTGGTCAACGTATCGGGCAGTCGCGTCATAT 18177 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 | | ||||| ||||| | |||||| || Sbjct 18176 GCACGCAGCATAGGCACAATACCGTTTGA 18148 >seq1836 Length=575610 Score = 123 bits (136), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||| || || |||||||| | || || || |||| Sbjct 191156 CATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTC 191097 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| || ||| ||||||||| || | || || ||||| Sbjct 191096 CGACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCA 191037 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || |||||||| ||| | ||| | ||||| || Sbjct 191036 GCAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAA 190977 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 ||| ||||| || || || |||||||| ||||| Sbjct 190976 CATCCAAAAGGAGTCCACCCTTCATCTCGGTAC 190944 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || ||||| |||||||| |||| || || ||||| Sbjct 191894 ATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 191835 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | || ||||| ||| Sbjct 191834 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 191775 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| |||||||||||| || || || || ||| Sbjct 191774 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACAAC 191715 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT 31398 || || || || || || |||||||| Sbjct 191714 ATCCAGAAGGAGTCAACCCTTCATCT 191689 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| |||||||| |||| || || ||||| Sbjct 192122 ATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 192063 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | || ||||||||| Sbjct 192062 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 192003 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || || || |||||| ||| Sbjct 192002 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAAC 191943 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| || || ||| | || | ||||||| Sbjct 191942 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGCCTCCGTGGCGGTA 191894 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || || || | || ||||| | || Sbjct 191612 CATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTC 191553 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | |||| | ||||| || ||| | ||| ||||| ||| | || ||||| | Sbjct 191552 CGATACCATCGACAACGTCAAGGCAAAGA-TCCAGGATAAGGAGGGCATCCCTCCCGATC 191494 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| || ||||||||||||||| ||| || ||| || | Sbjct 191493 AGCAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACA 191434 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || ||||| || || || || || Sbjct 191433 ATATTCAGAAGGAGTCGACCCTCCACCTTGTCCT 191400 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| | || || || | || Sbjct 191383 ATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCG 191324 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || || ||||| || | |||||||||||| Sbjct 191323 GACACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCAG 191264 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || ||| | || ||| ||| | || |||||| Sbjct 191263 CAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAAC 191204 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || ||||| || || Sbjct 191203 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCT 191172 >seq117 Length=384797 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || |||||||| |||| ||||| |||| Sbjct 361685 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTCG 361626 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | ||||| |||||| Sbjct 361625 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 361566 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||||||||| |||||||| ||| Sbjct 361565 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGAC 361530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| |||| || || | || Sbjct 361963 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCG 361904 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || || |||||| Sbjct 361903 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAG 361844 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || |||||||| || ||| | |||||| Sbjct 361843 CAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGAC 361808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754264009760