Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 >seq1 Length=925270 Score = 145 bits (160), Expect = 1e-29 Identities = 283/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| |||||||| || ||||| |||||||| | |||| || ||||| || || || Sbjct 578322 CAAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAATCAACTCGTTTGAGAATGT 578381 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||||||||| ||||| || || || ||||| ||||||| ||||| || ||||| || Sbjct 578382 CAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAA 578441 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CG-GCGC-TGTC 33754 ||||| || || || || || ||||| | |||| ||| | ||| || ||| |||| Sbjct 578442 AAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTC 578501 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| ||||||| || |||||||| || | || || || | || ||||| Sbjct 578502 TGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGGC 578561 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | ||| ||| || ||| | || || | || |||||||| | || || Sbjct 578562 GTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGTA 578621 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||| ||||| ||||| || || || || || ||||||||||| | || || | Sbjct 578622 TGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCGC 578681 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 | |||||| || | | || || ||| | | || || |||||||| ||||| Sbjct 578682 AGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATC 578735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800453215840