Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq117 96.9 3e-15 seq1836 91.5 1e-13 >seq117 Length=384797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || || || || | | |||||||||||| || ||||| | Sbjct 361772 CTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGCTTCCCAGCGAA 361831 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| || || ||||| || ||||| || || || ||||| ||| || || | | Sbjct 361832 GATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 361891 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | | ||||||||| | ||| | ||||| ||||||||||| || || Sbjct 361892 GTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAACGTCTTGAC 361951 Query 139753 GAATATTTGCATAGCT 139768 ||| || |||||| || Sbjct 361952 GAAGATCTGCATACCT 361967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || |||||| |||||||||||||||| || || || || || || ||| Sbjct 362091 TCCTCGAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTG 362150 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| || | | || | ||||| | | ||| ||||||| ||| | Sbjct 362151 TC-TTGAATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAAT 362209 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || | || || ||||| || |||||| Sbjct 362210 AGTCTTGCCCGTAAGAGTCTTCACGAAGATCTGCATA 362246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || | ||| | ||| ||| || || ||||||||||| Sbjct 361459 CCGCCACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAA 361518 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | ||| || ||||| ||||||| || ||||| || || || Sbjct 361519 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGA 361578 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | ||||| | | ||| || Sbjct 361579 ATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAAC 361637 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| ||||||||||| || ||||| || ||||| Sbjct 361638 CTCGAGAGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 >seq1836 Length=575610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| ||||| ||||| | || || ||| || | ||| Sbjct 190953 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTGC 191012 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| ||||| ||||| || || || || || || ||||| |||||| Sbjct 191013 TTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTC 191072 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| ||||||| || | |||||| |||||| Sbjct 191073 GCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGTC 191132 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 ||||| || || || || ||||| Sbjct 191133 AACGTCTTCACAAAAATCTGCAT 191155 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||| || || ||| || || | |||||| | |||||| || Sbjct 191415 GTCGACTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGTTTCCCG 191474 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || |||||||||||||| ||||| || || || ||| ||| || Sbjct 191475 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCCTGGATCTTTGCCTTG 191534 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || |||| || ||| ||||| | || | ||||| || || | ||| Sbjct 191535 ACGTTGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTCTTTCCCGTGAGCGTC 191594 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||||||||| Sbjct 191595 TTGACGAATATTTGCAT 191611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || || || |||| |||||| | ||| Sbjct 191692 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGC 191751 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| | ||||| || |||||||||||||| ||||| || ||||| ||| || Sbjct 191752 TTGCCCGCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 191811 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| || || | || | ||||||||| || Sbjct 191812 GCCTTCACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTG 191871 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || ||||| ||||||||| Sbjct 191872 AGAGTCTTGACGAAGATTTGCATA 191895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050494657600