Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 >seq1 Length=925270 Score = 183 bits (202), Expect = 4e-41 Identities = 380/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || ||||| ||| ||||| |||||||| | || || || ||||| || ||||| Sbjct 580742 CAAGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGT 580683 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| || ||||| || |||||||| || ||||| || || |||||||| || ||||| || Sbjct 580682 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGACGCAAAGGAGCCAGAGAA 580623 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGCT-GTC 50132 |||||| || || || || || || || || || | ||| | | || | |||| ||| Sbjct 580622 GAAGATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTC 580563 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| | ||||| || ||||||||||| | ||||| || || || ||||| Sbjct 580562 TGCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGC 580503 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || ||||| | | | || || || | || || ||||| | || ||| Sbjct 580502 ATCGAAGAGGTGCTCGCGCTGCTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATA 580443 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | | || || || ||||| || || ||||| || |||||||| |||| ||||| | Sbjct 580442 CGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGC 580383 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | | || ||||| | | ||||| || || || |||||| ||| Sbjct 580382 AGCCTGCACCTCGTTGGAGAAACGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAGGC 580323 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGTGTTA-GTTTATT 50429 || ||||| || | || || || || || |||||| | | || | || || Sbjct 580322 AGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGTT 580263 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| || | || || || || | || | || || || ||||| || || ||||| || Sbjct 580262 CCAGTCGTGGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGGCCTCAGC 580203 Query 50490 CTTTTTATACATATTCCAGAT 50510 ||| || ||||| | |||||| Sbjct 580202 CTTCTTGTACATCTGCCAGAT 580182 Score = 136 bits (150), Expect = 6e-27 Identities = 280/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| |||||||| || ||||| |||||||| | |||| | ||||| || || || Sbjct 578322 CAAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAATCAACTCGTTTGAGAATGT 578381 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||||||||||| ||||| || || || ||||| ||||||| || || || || || || Sbjct 578382 CAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAA 578441 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC-TGTC 50132 ||||| || || || ||||| ||||| || |||| ||| | |||| | ||| |||| Sbjct 578442 AAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTC 578501 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||||| || |||||||| || | || || || | || ||||| Sbjct 578502 TGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGGC 578561 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||| ||| || ||| | || || | || |||||||| | || || Sbjct 578562 GTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGTA 578621 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||| ||||| ||||| || || || || || ||||||||||| | || || | Sbjct 578622 TGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCGC 578681 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 | |||||| || | | || || || | | || || |||||||| || || Sbjct 578682 AGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATC 578735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249245131920