Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 230 3e-55 >seq1 Length=925270 Score = 230 bits (254), Expect = 3e-55 Identities = 388/558 (70%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| ||||| ||| |||| ||| Sbjct 580182 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACTGTCGAGGAGATCGACCTG 580241 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||| ||| | | ||| ||| || | ||||| | || || ||| Sbjct 580242 TCGAAGGACCTCCACGACTGGAACAACCGTATGAACGACAACGAGCGTCACTTCATCTCG 580301 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | ||||| || || | ||| || || || |||||||| || || || || ||| Sbjct 580302 CACGTCCTCGCCTTTTTCGCTGCCTCTGACGGTATTGTCAACGAAAACCTTGTCGA-ACG 580360 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| | ||| || | | |||| ||||| ||||| ||||| |||||||| Sbjct 580361 TTTCTCCAACGAGGTGCAGGCTGCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 580420 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG-- 125315 |||||| | ||||| || | ||| || || || |||| ||||| || ||| Sbjct 580421 GGAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACCTACATCAAGGACCCGAA 580480 Query 125316 -CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || || | ||| ||||| | || |||||||| | || | || || ||||| Sbjct 580481 GCAGCGCGAGCAC---CTCTTCGATGCCATCGACACCATCCCTTGCATCAAAAAGAAGGC 580537 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || ||||||| ||||| ||| | |||||| | || || || Sbjct 580538 GGACTGGGCCCTCCGCTGGATCGCAGACGAGCGGTCGAGCTTCGCCGAGCGTCTCGTCGC 580597 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| ||||| ||||| |||||||| || || |||||| | ||||| |||||||| Sbjct 580598 TTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCGTCGATCTTCTGGCTCAA 580657 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||||| || || ||| | ||||||| | || || |||||||| Sbjct 580658 GAAGCGTGGTCTCATGCCTGGCCTCACGTTCTCTAACGAGCTGATCAGCCGTGACGAGGG 580717 Query 125555 CCTACACTGTGACTTTGC 125572 | | ||| ||||| || Sbjct 580718 CATGCACACCGACTTCGC 580735 Score = 183 bits (202), Expect = 4e-41 Identities = 374/548 (68%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||||||| | || ||||||| || ||||| | |||||| | |||||||| | ||| Sbjct 578873 ATGTACAAGCAAGCGGAGGCCTCTTTCTGGACAGCAGAAGAGATAGATCTGTCGCACGAC 578814 Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTG 125147 | | || ||| | ||| | | || |||||| | || || || ||| | | Sbjct 578813 CACTGGGACTGGAACCATCGCCTCAACGACGACGAGCGACATTTCATCTCACACGTCCTC 578754 Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCA 125206 |||||||| || | |||||||| || || ||||| || || || || || ||||| | Sbjct 578753 GCCTTCTTCGCTGCATCCGATGGCATAGTGAACGAGAACCTCGTAGAG-CGCTTCTCGAA 578695 Query 125207 AGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGT 125266 ||| || | | || | ||| || ||||| |||||||||||||| |||||| | Sbjct 578694 CGAGGTGCAGGCTGCGGAAGCACGGTGTTTCTACGGCTTCCAAATCATGATGGAGAACAT 578635 Query 125267 GCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC- 125325 || || |||| ||||| || || || | ||||| || |||||| | | | Sbjct 578634 ACATTCCGAAACATACTCGCTCCTAATCGATACATACATCAAGGACCCGCAA-GAACGCG 578576 Query 125326 ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGA 125385 || || ||| |||| ||||| | | || | || || ||||| | |||| Sbjct 578575 ACCGTCTATTTGACGCCATCGAGGCAATACCATGCATCAAGAAGAAGGCGGACTGGGCTC 578516 Query 125386 TTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCG 125445 | || ||||||| ||| | ||| | ||| || |||||||||| |||||||||| Sbjct 578515 TCCGCTGGATCGCAGACAAGCGGTCGAGTTTCGCTGAGCGACTGGTGGCCTTCGCCGCCG 578456 Query 125446 TAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 | ||||||||||| || || || || || ||||| || ||||||||||| ||||| | Sbjct 578455 TGGAGGGCATCTTTTTCTCCGGCTCGTTCGCCGCCATATTCTGGCTCAAGAAACGCGGCC 578396 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTA-TATCTCGAGACGAGGGCCTACACTGT 125564 |||||||||||||||| | |||||||| | |||| || |||||||| | ||| Sbjct 578395 TCATGCCCGGACTGACATTCTCAAACGAGTTGATTATC-CGCGACGAGGGAATGCACACG 578337 Query 125565 GACTTTGC 125572 ||||| || Sbjct 578336 GACTTCGC 578329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039024663280