Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1836 125 2e-23 seq117 120 7e-22 seq1 93.3 1e-13 >seq1836 Length=575610 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| || || || | |||||||| | ||||| || Sbjct 191415 GTCGACTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGTTTCCCG 191474 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || || || |||||||| |||||||| || Sbjct 191475 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCCTGGATCTTTGCCTTG 191534 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| | || ||||| || || || ||||| || || || || Sbjct 191535 ACGTTGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTCTTTCCCGTGAGCGTC 191594 Query 104543 TTTACAAATATCTGCAT 104559 || || ||||| ||||| Sbjct 191595 TTGACGAATATTTGCAT 191611 >seq117 Length=384797 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | ||| || || || || || |||||||| Sbjct 362055 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAG 362114 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || ||||| || || || || || || ||||||||||| || ||||| Sbjct 362115 ATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTG 362174 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || ||||| || ||||||||||| || ||||| || || || Sbjct 362175 TCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCACG 362234 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 362235 AAGATCTGCAT 362245 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || ||||| || || ||||| | ||||| || | || || ||||| || Sbjct 361495 TCCTTCTGGATGTTATAATCCGAAAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAG 361554 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || ||||| || || || || || ||||||||||| || || || || Sbjct 361555 ATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTG 361614 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | || ||||| || || || ||||| || || | || || || Sbjct 361615 TCGATGGTGTCCGACGACTCAACCTCGAGAGTGATCGTCTTCCCGGTCAACGTCTTGACG 361674 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 361675 AAGATCTGCATT 361686 >seq1 Length=925270 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || ||||| || || || || ||||| ||||| || || || ||||| | ||||| ||| Sbjct 580593 GTCGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCGTCGATCTTCTGG 580652 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | || || ||||| || | || ||||||||||| |||| ||| | ||| Sbjct 580653 CTCAAGAAGCGTGGTCTCATGCCTGGCCTCACGTTCTCTAACGAGCTGATCAGCCGTGAC 580712 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || || | ||| |||||||||||| || Sbjct 580713 GAGGGCATGCACACCGACTTCGCTTGCTT 580741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151366269508024