Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq117 98.7 8e-16 seq1836 96.9 3e-15 >seq117 Length=384797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||| || |||||||| || | | | || | ||||| |||||| Sbjct 362321 TGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAAGCTGC 362380 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | || ||||| ||| || || Sbjct 362381 TTACCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTG 362440 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||||| ||||| || ||||| || || | Sbjct 362441 GCCTTTACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAG 362498 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| |||||||| Sbjct 362499 TGAGGGTCTTGACAAAGATCTGCAT 362523 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || |||||||||||||| ||||||||||| |||| || ||| |||| || |||||| Sbjct 361761 TGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGC 361820 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||| || || | | ||||||||| || ||| Sbjct 361821 TTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTC 361880 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | ||||||| ||||| || || || || |||| Sbjct 361881 GCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGG 361938 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || || || |||||||| Sbjct 361939 TCAACGTCTTGACGAAGATCTGCAT 361963 >seq1836 Length=575610 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGC 48580 |||||| ||| ||||||||| ||||||||||| | || ||| || ||||||||| | Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGA-AAGCGTC-CTGCCGTCCTCCAAC 191009 Query 48581 TGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATT 48640 ||||| || || | || | ||||||||| || || | || ||||||||| ||| Sbjct 191010 TGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT 191069 Query 48641 TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| ||||| | || || |||| ||||| ||| | || || || || ||| Sbjct 191070 TTCGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCG 191129 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||||||||||||||| Sbjct 191130 GTCAACGTCTTCACAAAAATCTGCAT 191155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240018150178