Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq117 105 6e-18 seq1836 91.5 1e-13 >seq117 Length=384797 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| | | |||||| || || |||||||| || || Sbjct 362090 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTT 362149 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||||||||| | ||| ||||||| || || |||| || || Sbjct 362150 GTCTTGAATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAAT 362209 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| ||||| ||||||||||| Sbjct 362210 AGTCTTGCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAA 94874 ||||| || | ||| || ||| | ||||| || |||||| ||||| || || | | Sbjct 362333 TCCTTCTGGATGTTGTAGTCGG--AGAGTGTCCGACCATCCTCAAGCTGCTTACCAGCGA 362390 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| | | |||||||| || |||||||| || || || | || || ||||| ||| Sbjct 362391 AGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTTACGT 362450 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | ||| ||||| | || || || | ||| ||||| || ||||| || || || | Sbjct 362451 TGTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAGTGAGGGTCTTGA 362510 Query 94995 CAAAGATCTGCATGC 95009 ||||||||||||||| Sbjct 362511 CAAAGATCTGCATGC 362525 >seq1836 Length=575610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||| || || ||||| || | |||||| || | ||| | ||||| ||||| Sbjct 191181 TGCAGCGTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGTACGGCCGTCCTCAAGCTGC 191240 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || | ||||| | | |||||| || || || ||||| || || || | || || Sbjct 191241 TTCCCAGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTATCTTGGATCTTC 191300 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| | ||| ||||| | ||||| || | ||||||||| || || ||| Sbjct 191301 GCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAACGTGATGGTCTTCCCGGTA 191360 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 191361 AGCGTCTTCACGAAGATCTGCAT 191383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | ||| |||||| || ||| | |||||| Sbjct 191913 CACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTC 191972 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| || | ||||| || ||||| || || || ||||| | Sbjct 191973 GAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 192032 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | | | ||||| | ||||| || | |||||| || || Sbjct 192033 GATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTT 192092 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||| Sbjct 192093 GCCCGTGAGAGTCTTAACGAAGATCTGCAT 192122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278995272080