Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1881 111 2e-20 seq1825 87.8 3e-13 seq1286 82.4 1e-11 >seq1881 Length=221524 Score = 111 bits (122), Expect = 2e-20 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| || |||||||||||||| || ||||||||||| ||||||||| |||| Sbjct 15998 AGGTATCACCAAACCCGCTATCCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 15939 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| || | ||| ||||||||||||||| | | ||| Sbjct 15938 CGGCCTCATCTATGAGGAGACCCGAGGTGTATTGAAGATCTTCCTCGAAAACGT 15885 >seq1825 Length=183558 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| || || ||||| || ||||||||| ||||||| || |||| || Sbjct 146661 GCTATCCGCCGTCTCGCCCGCCGTGGCGGTGTCAAGCGTATCTCTGGTCTGATCTACGAG 146602 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||| | |||||||||||| ||| ||| Sbjct 146601 GAGACCCGTGGTGTGCTCAAGATCTTCCTCGAGAACGT 146564 >seq1286 Length=293032 Score = 82.4 bits (90), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || || |||||||| || ||||||||||| ||||||||| |||| || | |||| || Sbjct 47821 GCCATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGGTCTTATCTACGAG 47762 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 |||| || | ||| | |||||||||||| ||| ||| |||| Sbjct 47761 GAGACCCGCGGTGTCCTTAAGATCTTCCTCGAGAACGTCATCC 47719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073208639354