Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=925270 Score = 123 bits (136), Expect = 3e-23 Identities = 368/562 (65%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| |||||||| || ||||| |||||||| | |||| | ||||| || || || Sbjct 578322 CAAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAATCAACTCGTTTGAGAATGT 578381 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||||||||| ||||| || || || ||||| ||||||| ||||| || || || || Sbjct 578382 CAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAA 578441 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CG-GCGC-TGTC 33476 ||||| || || || || || ||||| | |||| ||| | ||| || ||| |||| Sbjct 578442 AAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTC 578501 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 ||||| ||||||| || |||||||| || | || || || | || ||||| Sbjct 578502 TGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGGC 578561 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | ||| ||| || ||| | || || | || |||||||| | || || Sbjct 578562 GTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGTA 578621 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 |||| ||||| ||||| || || || || || ||||||||||| | || || | Sbjct 578622 TGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCGC 578681 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || || | | || || || | | || || |||||||| || || || Sbjct 578682 AGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATCGGATGC 578741 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 33772 || || || || | || ||| || |||| | ||||| | ||| | | | Sbjct 578742 AGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGCTCGTC-GTCGTTGAGGCGATGGT 578800 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 |||| || | || | || | ||||| ||||| ||||||| || || ||||| | Sbjct 578801 TCCAGTCCCAGTGGTCGTGCGACAGATCTATCTCTTCTGCTGTCCAGAAAGAGGCCTCCG 578860 Query 33833 CCTTTTTATACATGTTCCAGAT 33854 | | || |||||| ||| || Sbjct 578861 CTTGCTTGTACATGCGCCATAT 578882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622930240262480