Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1836 136 4e-27 seq1666 113 4e-20 seq117 113 4e-20 seq1 105 6e-18 seq679 91.5 1e-13 >seq1836 Length=575610 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||||||| || |||||| Sbjct 191908 CGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCA 191967 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| || ||||||||||| |||||||| || || ||| Sbjct 191968 TCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 192027 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | || | || |||| ||||||| |||| || | Sbjct 192028 TCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATC 192087 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| || ||||| |||||||| Sbjct 192088 GTCTTGCCCGTGAGAGTCTTAACGAAGATCTGCAT 192122 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| || || || | || | |||||||||||| ||||| ||||| ||| | Sbjct 191385 CCACCGCGCAACCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGAC 191444 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | ||| || || ||| |||| | |||||||| || |||||| Sbjct 191445 AGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 191504 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | ||||||| |||||| | Sbjct 191505 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTATCGGAGGACTCAACC 191564 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| || |||||| Sbjct 191565 TCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGACGAATATTTGCATG 191612 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 131031 ATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTG 131090 ||| | ||| ||||||||||| ||||||||||| | || | |||||| | ||| Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTG 191011 Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || ||| |||| | |||||||||||| || || || || || ||||| |||||| Sbjct 191012 CTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTT 191071 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | ||||| | || | || |||| ||||||| || | || | || || ||||| Sbjct 191072 CGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGT 191131 Query 131211 TAGAGTTTTTACGAAAATCTGCATGACT 131238 | || || || |||||||||||| || Sbjct 191132 CAACGTCTTCACAAAAATCTGCATGCCT 191159 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | ||| | ||||||||||| || ||||| || || Sbjct 191156 GCCTCCACGAAGACGGAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTATAGTCCGA 191215 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| | ||| |||||||| || || Sbjct 191216 AAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGTTGCTGGTCGGGCGG 191275 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| ||| ||||| | || | || || | ||||||| Sbjct 191276 GATACCCTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 191335 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 191336 CTCCAACGTGATGGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 191383 >seq1666 Length=152845 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || |||| ||| |||||||| || |||||||| || || Sbjct 77710 CCACCACGCAGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 77769 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||| ||||| |||||| Sbjct 77770 AGAGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 77829 Query 131128 AT 131129 || Sbjct 77830 AT 77831 >seq117 Length=384797 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| || || ||| ||| ||| || |||||||| || ||| | Sbjct 361772 CTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGCTTCCCAGCGAA 361831 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | ||||||||||| ||||||||||| || ||||| ||| ||| ||||| | Sbjct 361832 GATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 361891 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || || | ||||| | |||| ||| | || || ||||| | || || || Sbjct 361892 GTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAACGTCTTGAC 361951 Query 131223 GAAAATCTGCAT 131234 ||| |||||||| Sbjct 361952 GAAGATCTGCAT 361963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||| | ||||| ||||| ||||||||||| || | Sbjct 362054 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAA 362113 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCT 131161 ||| | ||| |||||||| || || || || || ||||| ||| | | || ||||| | Sbjct 362114 GATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTC-TTGAATCTTTGCCTTGACAT 362172 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | || || | ||||| | || | ||||| || || || || ||||| || | Sbjct 362173 TGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCA 362232 Query 131222 CGAAAATCTGCAT 131234 |||| |||||||| Sbjct 362233 CGAAGATCTGCAT 362245 >seq1 Length=925270 Score = 105 bits (116), Expect = 6e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 ||| |||||| ||||| |||||||||| || ||||||||| ||||||| || ||| Sbjct 578491 CGAGTTTCGCTGAGCGACTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTTTTCTCCGGCT 578432 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || |||||||| || | |||| | ||| |||||||||| ||||| || | Sbjct 578431 CGTTCGCCGCCATATTCTGGCTCAAGAAACGCGGCCTCATGCCCGGACTGACATTCTCAA 578372 Query 46262 ACGAGCTGAT-ATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG 46307 ||||| |||| ||| ||||||||||| |||| |||||||| || || Sbjct 578371 ACGAGTTGATTATC-CGCGACGAGGGAATGCACACGGACTTCGCATG 578326 >seq679 Length=256444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | |||||||||||| || |||||||| || | |||||| | Sbjct 229203 CGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCG 229262 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||||| ||||||||||||||| |||| | ||||||||||| || ||||| Sbjct 229263 TCCTCGAGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCTGGGGGGAT 229312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999949451520