Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1335 140 2e-28 seq55 140 2e-28 seq1555 114 9e-21 seq1836 91.5 1e-13 seq117 82.4 5e-11 >seq1335 Length=43126 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 33561 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 33620 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 33621 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 33655 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 35555 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 35614 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 35615 GCCAATATTTAGCTTTA 35631 >seq55 Length=3912 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1041 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1100 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1101 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1135 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3035 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3094 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 3095 GCCAATATTTAGCTTTA 3111 >seq1555 Length=357173 Score = 114 bits (126), Expect = 9e-21 Identities = 216/312 (69%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| |||| || ||||| ||||| || ||||||||| | ||| ||| | || |||| Sbjct 193969 CCAAGATCGAAGGCAAGGGTAACGGCATCAAAACCGTCGTACCCAATATGTCCGACGTCG 193910 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | ||||||| | || || ||| |||||||| || | ||||| ||||| || || | Sbjct 193909 CCCGGGCGCTCAGTCGGCCGCCCATGTACCCGACCAAGTTCTTCGGCTGCGAGCTCGGTG 193850 Query 6352 CTCAGA-CGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCT 6410 | ||| | | | || | || ||||| |||| |||||| ||||| | || || | Sbjct 193849 CGCAGGTCACCGGC-GACGAGAAGAACGACCGCTACATCGTCAACGGCGCCCACGACGCC 193791 Query 6411 GCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 | ||||||| || | || |||||||| || ||||| |||||||| | ||| Sbjct 193790 ACGAAGCTGCGCGAGCTGCTCGACGGCTTCATCGAGAAGTTCGTGCTGTGCAAGTCGTGC 193731 Query 6471 GATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAG-GGCTG 6529 | ||||||||||| || || || | || ||| | ||| ||| | || | | ||| Sbjct 193730 AAGAACCCGGAGACGGACCTGATCAT---CACGAAGGGCGACATCAT-TATCCGCGACTG 193675 Query 6530 CAAAGCGTGCGG 6541 ||| |||||||| Sbjct 193674 CAAGGCGTGCGG 193663 >seq1836 Length=575610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || | || || || |||||| ||||||||||| || | Sbjct 191383 TACCACCGCGCAACCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGG 191442 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || || ||||| ||||| || || ||||| || ||||||| | Sbjct 191443 ACAGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAAGATGAGGCGCTGCTGATCGGGAG 191502 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || || ||| || ||| ||| || || | || ||||| |||| Sbjct 191503 GGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTATCGGAGGACTCAA 191562 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || ||||| | || || |||||||| |||||| Sbjct 191563 CCTCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGACGAATATTTGCATG 191612 >seq117 Length=384797 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| ||| | || || ||||||||||| || || || ||||| || | | ||| | Sbjct 361470 ACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCC 361529 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || || || || || || || || ||||| || || || | || | ||| || || Sbjct 361530 GTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 361589 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAA 38280 |||| ||| || ||| || || | || || || | || ||||| || | || | Sbjct 361590 GTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTC-CGACGACTCAACCTCGAGAGTGA 361648 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| || || ||||| |||||||| Sbjct 361649 TCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 38109 ACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| ||| |||||||||||||| || || ||||| || || | || | || || Sbjct 362036 ACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 362095 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || ||||| || || ||||| || || | || | || || ||||| Sbjct 362096 GAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTG 362155 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| ||| ||| ||||| | || || || | ||||| || | |||||||| || Sbjct 362156 AATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTT 362215 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | || |||||||| |||||||| Sbjct 362216 GCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938309035918