Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 214 2e-50 >seq1 Length=925270 Score = 214 bits (236), Expect = 2e-50 Identities = 388/562 (69%), Gaps = 7/562 (1%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGT 93147 ||||| || ||||| || || | || ||||| || |||| ||||||| || |||||| Sbjct 578323 AAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCG-GATAATCAACTCGTTTGAGAATGT 578381 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | || || |||||||||||||| ||||| | || || || || || Sbjct 578382 CAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAA 578441 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTAC 93266 ||| || || |||||||| || || ||||| | || || || ||| | | | | | | Sbjct 578442 AAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTC 578501 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||| |||||| | |||||| || || || ||||| || || |||| || ||||| | Sbjct 578502 TGC-GATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGG 578560 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 ||| |||||| || || || | || || |||||||||||||||| || || | Sbjct 578561 CGTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGT 578620 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | |||| ||||| | |||||||| |||||||| ||||||||||| | ||||||| Sbjct 578621 ATGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCG 578680 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 |||||| || | || || | ||||||||| || || || ||||| |||||||||| Sbjct 578681 CAGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATCGGATG 578740 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTAT 93563 | || || || || | | || || |||||| ||| || || || | | | | Sbjct 578741 CAGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGCTCGTCGTCGTTGAGGCGATGGT 578800 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| || | | || | || ||||| | ||||| | ||||| || || || || | Sbjct 578801 TCCAGTCCCAGTGGTCGTGCGACAGATCTATCTCTTCTGCTGTCCAGAAAGAGGCCTCCG 578860 Query 93624 CTTTTTTGTACATATCCCATAT 93645 ||| |||||||| |||||| Sbjct 578861 CTTGCTTGTACATGCGCCATAT 578882 Score = 165 bits (182), Expect = 9e-36 Identities = 375/561 (67%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| || |||||||| || | || ||||| || |||| ||| || ||| || Sbjct 580741 AAGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTG 580682 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | || || | || || || ||||||||||| || || || ||||| ||||| || Sbjct 580681 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGACGCAAAGGAGCCAGAGAAG 580622 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACT 93267 || ||||| || ||||| || || || || | ||| ||||| || | | | | || Sbjct 580621 AAGATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTCT 580562 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || |||||| | ||||| || || || || || || ||||| | || ||||| || Sbjct 580561 GC-GATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGC 580503 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || |||| || |||| | || || ||||| || ||||| | || ||||| Sbjct 580502 ATCGAAGAGGTGCTCGCGCTGCTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATA 580443 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | | || || |||| |||||||| || ||||| |||||||| |||| || || | Sbjct 580442 CGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGC 580383 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 |||||| || | || || | || || || ||||| ||||| ||||| || || || Sbjct 580382 AGCCTGCACCTCGTTGGAGAAACGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAGGC 580323 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT---TAAGCTTATC 93564 || ||||| || | | ||| || || || ||| | || | || | || | Sbjct 580322 AGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGTT 580263 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| || || || || || |||| || ||||||||||| || || || || || Sbjct 580262 CCAGTCGTGGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGGCCTCAGC 580203 Query 93625 TTTTTTGTACATATCCCATAT 93645 || |||||||| | ||| || Sbjct 580202 CTTCTTGTACATCTGCCAGAT 580182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845639464720