Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1836 129 5e-25 seq117 129 5e-25 >seq1836 Length=575610 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || ||| |||||||||| || || | || Sbjct 191155 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTCC 191096 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| || ||||||||||||||||| || || || Sbjct 191095 GACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 191036 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| ||||| | | || | || ||||||||| Sbjct 191035 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAAC 190976 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || ||||| || |||||| | ||| Sbjct 190975 ATCCAAAAGGAGTCCACCCTTCAT 190952 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || ||||| ||| | || || || ||| |||| || ||||| || | | Sbjct 192123 GATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTC 192064 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | ||| | | || || || || ||||||||||| || || ||||| || Sbjct 192063 CGACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 192004 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || || || ||||| ||| | |||||| ||||||| | ||||||||||| Sbjct 192003 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAA 191944 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 191943 CATCCAGAAGGAGTCCACC 191925 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || ||| |||| || ||||| || | || Sbjct 191894 ATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 191835 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| || || |||||||| Sbjct 191834 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 191775 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||||| || || |||||| | || || |||||| Sbjct 191774 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACAAC 191715 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 191714 ATCCAGAAGGAGTCAACCCTTCAT 191691 >seq117 Length=384797 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || | || ||||| || || | | Sbjct 362245 ATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCT 362186 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||| |||||||||||||||||||||||||| || || Sbjct 362185 GACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 362126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | |||||| ||||| ||||||| |||||| Sbjct 362125 CAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 362066 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 362065 ATCCAGAAGGA 362055 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || ||| ||||||| || || || | | Sbjct 361685 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTCG 361626 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 361625 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 361566 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| ||||| ||| || | || ||||| ||| Sbjct 361565 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTTTCGGATTATAAC 361506 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 361505 ATCCAGAAGGA 361495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716858582570