Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1334 116 8e-21 seq1 100 6e-16 seq1555 93.3 9e-14 >seq1334 Length=66226 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 ||||| |||||||||||||||||||| ||||| | ||||| || | | || || Sbjct 39489 CTGTCTGGTGGTTGGAAGATGAAGCTTGCCCTTGCGCGCGCAATGTTGTTCAAGGCTGAC 39430 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || | |||||||| || |||||| ||||| | |||||| || ||||| | | Sbjct 39429 ATCCTGCTCTTGGATGAGCCTACGAACCACTTGGACGTCGTCAACGTCGCGTGGCTGGAG 39370 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| ||| | || |||| | | ||| |||||||||| |||||||| |||||| Sbjct 39369 AACTACCTCACCGGCCTCAAGACTTGCACGTCCATCATTGTCTCGCACGACTCCGGCTTC 39310 Query 279885 CT 279886 || Sbjct 39309 CT 39308 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||| || || |||| | || | ||||| Sbjct 39018 GTCCTCGGTCCCAACGGTTCCGGAAAGTCGACGCTTGTCAAGTTGCTCATCGGCGATTTG 38959 Query 280233 CAGGCCA-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| | | || ||| || |||||||| || ||| || || | ||||||||| Sbjct 38958 GAGCCCAACAGGGGCGGTGAGTGCTGGAAGCACCCGAACTTGGTCATCGGTTACGTCGCG 38899 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||||| |||||||| |||| ||| || | | ||||| | Sbjct 38898 CAGCACGCGTTCCACCACATCGATAACCACCTCGACAAGACCCCGCTCGAGTACATGCTC 38839 Query 280350 TGGCGCTA 280357 |||||||| Sbjct 38838 TGGCGCTA 38831 >seq1 Length=925270 Score = 100 bits (110), Expect = 6e-16 Identities = 357/544 (66%), Gaps = 23/544 (4%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||| || ||||| | |||||| || | ||||||||||| | || Sbjct 580724 GTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTGAGGCCAGGCATGAGACC 580665 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 ||| ||| ||||||||||||| | ||| |||||| |||||||| | | ||||||||| Sbjct 580664 ACGCTTCTTGAGCCAGAAGATCGACGC-AAAGGAGCCAGAGAAGAAGATACCCTCGACGG 580606 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTC--CTGCGA-CAAGAACTTCT 252016 | | || || || ||||| || || |||| || |||||| | || Sbjct 580605 CAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTCTGCGATCCAG---CGGA 580549 Query 252017 GTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGT 252076 | ||||| | ||||||||| | ||||| || ||||| ||||| ||||| | | Sbjct 580548 GGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCATCGAAGAG-GTGC 580490 Query 252077 TCCGCTCGGCATC--GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATG 252134 | ||| | || || ||||| |||| | || | ||||| || ||| |||| || || Sbjct 580489 T-CGCGCTGCTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATACGTCTCGGAGTG 580431 Query 252135 GATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTC 252194 |||| || | | |||||| | | ||||| || || || | || || Sbjct 580430 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGCAGCCTGCACCTC 580371 Query 252195 CGTGGAAAAGTTGTTTG-CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 252253 |||| || ||| | ||| ||| || | || || || || | | || || ||| Sbjct 580370 GTTGGAGAA-ACGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAGGCAGCGAAAAAGG 580312 Query 252254 CAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGA---GCTTGTCACGCCAGTCGG 252310 | || | | | ||||||||||||||| | |||||| | | |||| ||||||| Sbjct 580311 CGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGT---TCCAGTCGT 580255 Query 252311 CAATGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGT 252370 | ||||| ||| | || || || |||||||| | || | | |||||||||| Sbjct 580254 GGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGGCCTCAGCCTTCTTGT 580195 Query 252371 ACAT 252374 |||| Sbjct 580194 ACAT 580191 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 251544 ATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCAT 251603 ||| |||||||| || |||||||| || | |||||||| || ||||| | ||||| Sbjct 581077 ATAGTCAGATACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 581018 Query 251604 GAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCG 251663 ||||||||||||||| || | |||||| ||| | ||| || || || | || || Sbjct 581017 GAAGTCGAAGGGGTTCGTCACGTTGTACACCTTCGAGCCGCCGAGCGCGACAAGGAGCCG 580958 Query 251664 GTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA 251723 ||| || || || || | ||||| | ||| || | ||||||||| || | | || Sbjct 580957 GTCAGCGACGAATTCGATGTACTGGCACATGAGCGTCGCGTTCATGCCGATGAGGCCGCA 580898 Query 251724 AGGAA 251728 ||||| Sbjct 580897 AGGAA 580893 >seq1555 Length=357173 Score = 93.3 bits (102), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||||||||| || ||||| || ||||| | ||||| |||||||| |||| Sbjct 286911 AGGTCGCTCAACTTGTCGGTTACGTGTCCGAGCACGCCCAATACCACCACGGTGAACAGA 286852 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 || || | ||||||| | | || |||||||| || ||||| |||||||||||| Sbjct 286851 GTTTGATGTCGACCATTGTCAACCTCGCCCAGGACTACGTCGGCAGCAACAACATGAACC 286792 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTG 218836 | || | || |||||||| || ||| |||| ||| || ||||| |||||| | Sbjct 286791 TCCTCATGCCGAACGGTCAATTCGGTACTCGCGACCAGGGCGGCAAGGACCATGCTTCGG 286732 Query 218837 CCAGGTATATCTTTACAAAGTTGTCGCCC--GTGACGCGCCAGGTGTTC 218883 || | || ||| |||| || ||||||| | |||||| |||||| Sbjct 286731 CCCGTTACATC--TACACAGAGGTCGCCCCGATTACGCGCTCCGTGTTC 286685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027808117571698